Detailed information on CNT30309694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Camelina sativaSetaria viridis62.5316.1291.06302forward
CNT30407349Camelina sativaBeta vulgaris19.8839.3495.8396reverse complement
CNT30566352Camelina sativaActinidia chinensis18.0123.7794.2587forward
CNT30606094Camelina sativaGossypium raimondii51.5565.5391.16249forward
CNT30680118Camelina sativaTriticum urartu11.3924.5594.5555reverse complement
CNT30367812Camelina sativaSorghum bicolor30.6470.8192.57148reverse complement
CNT30147885Camelina sativaBrachypodium distachyon5353.6793.36256forward

Expression of CNT30309694

Peptides detected in this lncRNA

>peptide 1 (46 aa)
RRTRNGELSPPFPPQLFRMLVLRMSDCPSPTLTAQPASGQLMHSTY*

Sequence

>CNT30309694
AGGAGAACCAGGAACGGAGAGCTTTCCCCCCCTTTTCCGCCCCAACTCTTTAGAATGCTGGTTTTAAGAATGAGTGATTGCCCTTCTCCGACCCTTACTG
CCCAACCTGCGAGCGGACAGCTAATGCATTCCACTTATTGAACAGGACGATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTCGCTCAAAGG
GTTGAAGGGAGATAGTGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCAATCCCAGACGAGGGAACCCTAGGAGAGCCGCCGAC
TCCAACTACCGTCCATGTACGATCCATACTAGATCTGACCAACTGACCATCCTACCTCCTCTACGTTCTTGACAGCCCATCTTTGTCTCAGTAGAGTCTT
TCAGTGGCATGTTTCGGTCCTTTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCC