CANTATAdb - search

Detailed information on CNT30309636

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT301916	Camelina sativa	Zea mays	31.52	89.68	83.84	365	forward

Expression of CNT30309636

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MIPAAATKESVRVDEVFVSVPGSSETLQRSISHLVVERNTSGLDGDTTFCLISSGISHTNITSNLLGNDTSSSNQGISESGFP

>peptide 2 (38 aa)
MVIPRSASSALVSVIRTSPATSWAMIPAAATKESVRVDF

>peptide 3 (53 aa)
MQSTTTRAPSVIRRAAVTSEEKSTCPGESIRLMRYSFPSLAPVKLFKEASVIS*

Sequence

>CNT30309636
TACCTCTGGGCAGTGTGGGGAGATGGCAAATGAAAAATCATCATCTCAAGTAGTGCAGTACTGGCAGGGAGCCACGTCTGCATAACACGCTTCATCAAAG
GTTTAGCCAACAGTTCCTTCTCATCATTCTTCATCTGGACACCAAGCTTGGCCAACATAGGCCACAACTTGTCCTTCTGGTCATTCATGCAAGTAGCAAT
GATTTGCTTGATGGGTTCATAGCAGAACTGCACAAACCCACGCTTGCAGGTCGCGGAACCAGTGTTTTTGCCAGTCCATTTCCTGGTAGCAGGGTCAAAG
AAATTTTCACCCCAAAGCCTCTCCATCATCTTAGACTCATCAACACCGAACTTGGAAGCATACATCTTGGCGAAGTTGGTCAGAGTAAACGCCCAACCGT
GGAGACCAGCAGAAAACGCAACAGTACCCTTCTCTGGATACACCTGAACATCACCAAGGAGAGGATCCTCGTATGTAGCCATGATGACGTTTGCATTCTC
AATGACCCTCGAGAAAGTCTGGTAAGCCTCCTCACCATCAACTTGAAGCTCAAGGAAACACCTGTCCATCTTGTTGACAGTCAAGACGGGTCGAATCCTC
TCACCAAGAGCCTGACGTAGAACAGTCTCAGTCTGAACACACACACCCTCAATGCAGTCGACCACGACAAGAGCACCATCAGTAATACGGAGAGCAGCAG
TAACCTCAGAAGAAAAGTCAACATGTCCAGGTGAATCGATAAGGTTGATGAGGTATTCGTTTCCGTCTCTGGCTCCAGTGAAACTCTTCAAAGAAGCATC
AGTCATCTCGTAGTAGAGAGAAATACCAGTGGACTTGATAGTGATACCACGTTCTGCCTCATCAGCTCTGGTATCAGTCATACGAACATCACCAGCAACC
TCTTGGGCAATGATACCAGCAGCAGCAACCAAGGAATCAGTGAGAGTTGATGAGGTATTCGTTTCCGTCCCTGGCTCCAGTGAAACTCTTCAAAGAAGCA
TCAGTCATCTCGTAGTAGAGAGAAATACCAGTGGACTTGATGGTGATACCACGTTCTGCCTCATCAGCTCTGGTATCAGTCATACGAACATCACCAGCAA
CCTCTTGGGCAATGATACCAGCAGCAGCAACCAAGGAATCAGTGAGAGTGGATTTCCC