« Back to Camelina sativa search


Detailed information on CNT30309594


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640117Camelina sativaNymphaea colorata93.7490.2395.971811forward
CNT30318212Camelina sativaCorylus avellana93.6367.397.131809forward
CNT30519047Camelina sativaJuglans regia93.8993.8496.641814reverse complement
CNT30283192Camelina sativaChenopodium quinoa93.6385.996.961809forward
CNT3021658Camelina sativaCitrullus lanatus91.98100.1197.31777forward
CNT30628671Camelina sativaVigna unguiculata93.6361.8997.181809forward
CNT30200773Camelina sativaPisum sativum93.6361.5797.181809reverse complement
CNT30506608Camelina sativaNicotiana attenuata93.6370.3995.631809reverse complement
CNT3047196Camelina sativaPrunus dulcis93.6375.7296.741809reverse complement
CNT30638988Camelina sativaCapsicum annuum92.7594.0797.321792forward
CNT30544406Camelina sativaBrassica napus93.8490.9799.341813reverse complement
CNT3083352Camelina sativaBrassica juncea93.8498.7599.391813forward
CNT30261808Camelina sativaBrassica rapa84.7878.3799.391638reverse complement
CNT30422282Camelina sativaPapaver somniferum93.7457.3896.521811forward
CNT3025914Camelina sativaPopulus trichocarpa93.01100.1797.051797reverse complement
CNT30326143Camelina sativaAsparagus officinalis93.6958.7796.911810reverse complement
CNT3036478Camelina sativaCucumis melo91.9358.4297.131776reverse complement
CNT30115267Camelina sativaEutrema salsugineum93.8496.0898.511813reverse complement

Expression of CNT30309594

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KRFSPAKAHLSLGQKMMVETSSVLSFLSVSLSVVGNRRDR*

>peptide 2 (36 aa)
MITRRIAWPLCWRRIIQISALSTFDGRIVAYHGGNG*

>peptide 3 (52 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 4 (47 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEASLHGRLLRGTMAV*

>peptide 5 (44 aa)
MHLLDKRSTRALPVALMIHDNSTDRMAFVLATHHSNFCPINFRW*

>peptide 6 (33 aa)
MPTRDQRMLLLGLRWHLMRNQSFWVPGGVWSQG*

>peptide 7 (36 aa)
MGRPVRLSVCTGRLVPSVGDTLLVLIGRVVPPALLL*

>peptide 8 (30 aa)
MIATWLILPVVICLSQRLSHACVSMNEFRL*

>peptide 9 (33 aa)
MPLDVLGRTRATLMYSTSSHLGRQARVIFEISS*

Sequence

>CNT30309594
AAGCGATTCAGTCCCGCCAAAGCACATCTGTCCCTCGGACAAAAGATGATGGTCGAGACCTCGTCCGTTCTCTCTTTCCTTAGCGTTAGTTTGAGCGTGG
TGGGGAATCGCCGTGATCGATGATTGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAA
TTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTAACTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTG
CAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTCTGCCCGTTGCTCTGATGATTCATGATAACTCGACGGATCGC
ATGGCCTTTGTGCTGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTAACGGGTGACGGAGAATT
AGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGAC
AATAAATAACAATACCGGGCTCTTTCGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGC
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGATGGGTCGCCCGGTCCGCCTTTCGGT
GTGCACCGGTCGGCTCGTCCCTTCGGTCGGCGATACGCTCCTGGTCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCT
CAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGG
ACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAT
CAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTTTTAGGACTC
CGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGT
GGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGG
TGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTT
CACGGCCGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG
CTACACTGATGTATTCAACGAGTTCACACCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCT
TCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGATCC
GGTGAAGTGTTCGGATCGCGGCGACGTGGGTGGTTCGCCGCCTGCGACGTCGCGAGAAGTCCACTAAACCTTATCATTTAGAGGAAGGAGAAGTCGTAAC
AAGGTTTCCGTAGGTGAACCTGCGGAAGGATC