Detailed information on CNT30309155


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Triticum aestivumSetaria viridis15.4337.0599.71342forward
CNT30524653Triticum aestivumSetaria italica23.6443.7499.62524reverse complement
CNT30221494Triticum aestivumHordeum vulgare35.1462.7299.23779reverse complement
CNT30248040Triticum aestivumAvena sativa35.1857.9598.59780forward
CNT30360998Triticum aestivumLactuca sativa13.0810098.97290reverse complement
CNT3040451Triticum aestivumMarchantia polymorpha8.1630.8393.37181reverse complement

Expression of CNT30309155

Peptides detected in this lncRNA

>peptide 1 (29 aa)
EGFNPATGSPTATLLRLHPSRRPHRGMRQ*

>peptide 2 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFQLSLPL*

>peptide 3 (37 aa)
MIRRGQDSNLQSSGHEPDELTNSSTPFLPLIFLSLFP*

>peptide 4 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 5 (44 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGGNFSLGACLSNTKRGFCSL*

>peptide 6 (50 aa)
MIAHSTKELYKRHYPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 7 (45 aa)
MPSLPPPPTRRRRNQFQPNLHAHWYFDVTIGRSPWVWGKTTSVHT*

>peptide 8 (61 aa)
AKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 9 (87 aa)
MLSHPGVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFHHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 10 (66 aa)
MLHRLCRPPSIPLSFRLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPRRR*

>peptide 11 (46 aa)
RRIQSSHRFPYGYLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

Sequence

>CNT30309155
GCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCA
AAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTAC
AGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAA
TCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCAATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGTCCATGCGGACTTGACGT
CATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACG
TTCCACACCATTTTCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAATTTCAACCAAACCTCCATGCTCACTGGTACTT
TGACGTTACTATAGGTAGGTCTCCGTGGGTCTGGGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTC
TTGCTGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAA
AACGAGGGTTTTGCTCGTTATAGGACTTGACCAAACATCTCACGGCACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCTGTTA
AGGACAGGTTTTGTTGTTCATATGTCAAGGGTTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAAT
TCCTTTGAGTTTCCGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGT
TTACGGCATGGACTACCAGGGTATCTAATCCTATTCGCTCCCCATGCTTTCGCACCCCGGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT
TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCACCACTTTTTGG
CGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACG
GAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCT
GGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGAC
CAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGC
CCGAACTGTTCGGCAGATTCCCACGCATTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGT
AGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGT
GTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTTTGACTATGATTAGGCGGGGACAGGATTCGAACCTGCAGTCTTCAGGTCAT
GAGCCTGATGAGTTGACCAATTCCTCTACCCCGTTTCTTCCCCTGATCTTTCTTTCCCTCTTCCCATAAACATTGATTCTCTCTCCTAACCACTCTTAAA
TATGTGAAATACACGGAATCGATCCAAAACTACAAGCAAGGGAATCAACTCTTATTGCCGTAAAGGAAAAATAACCCCTTTCCTTTATATATATATACAA
GGAACAAGTAGCCTTCG