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Detailed information on CNT30308860


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30475689Triticum aestivumSaccharum spontaneum62.4263.0991.4465forward
CNT30722497Triticum aestivumTriticum spelta91.28100100680forward

Expression of CNT30308860

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSF*

>peptide 2 (62 aa)
MAQTIEFHMILRVHLFITFSSSKLKATSHHKFVDTNKHSSDRNTTRAHAENYIGVHRQHQTC*

>peptide 3 (43 aa)
MRRCWSGGIPSLSWILALTLSIVSDDSTSRVMVLPVRVFTKICI

>peptide 4 (51 aa)
TRPMVEFPLYFMKESGDKQHRYGTDDRVSHDIKGSLIHHVFIIQTQSHITS*

Sequence

>CNT30308860
ACCAGACCAATGGTAGAATTTCCTCTATACTTCATGAAAGAATCTGGAGACAAACAACACAGGTATGGCACAGACGATAGAGTTTCACATGATATTAAGG
GTTCACTTATTCATCACGTTTTCATCATCCAAACTCAAAGCCACATCACATCATAAGTTTGTAGACACAAACAAACATAGCAGCGATAGAAACACGACCA
GAGCACACGCTGAAAACTACATTGGAGTACACCGACAACACCAGACCTGTTAACCCTGAGACAGAAGCGGCTATCACGCACTTACTGGCCACCACGCAGG
CGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGT
CCGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTT
GACGAAAATCTGCATGCCTCCACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGC
TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCGATCGTGTCAGACGACTCGACCTCGA
GGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATCT