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Detailed information on CNT30308637


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-96

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30242975Triticum aestivumAvena sativa25.1864.6393.08477forward

Expression of CNT30308637

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MAQTIEFHMILRVHLFITFSSSKLKATSHHKFVDTNKHSSDRNTTRAHAENYIGVHRQHQTC*

>peptide 2 (58 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSKVMVLPVRVLTKICMPPRSLSTRWRVDSF*

>peptide 3 (50 aa)
RPMVEFPLYFMKESGDKQHRYGTDDRVSHDIKGSLIHHVFIIQTQSHITS*

>peptide 4 (30 aa)
MDRTSTISSLVRGLDSPDSSISMLKWDTTT*

>peptide 5 (50 aa)
MRRCWSGGIPSLSWILALTLSIVSDDSTSRVMVLPVRVFTKICICKYKVQ*

>peptide 6 (40 aa)
MEVLATYQRNMKLNKQTWATMLTDSLAKQAKIPIYQHNLS*

Sequence

>CNT30308637
CAGACCAATGGTAGAATTTCCTCTATACTTCATGAAAGAATCTGGAGACAAACAACACAGGTATGGCACAGACGATAGAGTTTCACATGATATTAAGGGT
TCACTTATTCATCACGTTTTCATCATCCAAACTCAAAGCCACATCACATCATAAGTTTGTAGACACAAACAAACATAGCAGCGATAGAAACACGACCAGA
GCACACGCTGAAAACTACATTGGAGTACACCGACAACACCAGACCTGTTAACCCTGAGACAGAAGCGGCTATCACGCACTTACTGGCCACCACGCAGGCG
GAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCC
GGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGA
CGAAAATCTGCATGCCTCCACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTT
GCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCGATCGTGTCAGACGACTCGACCTCGAGG
GTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATCTGTAAATACAAAGTACAATAAACCCAGAATAAGGAGCAGTTAAAAGGAAACATGCAGG
ACATTAAACAATACAAGTACAGAGAGAGATGGAAGTCCTAGCTACGTATCAGCGCAATATGAAATTGAACAAACAGACTTGGGCAACCATGTTAACAGAC
TCGCTAGCAAAGCAAGCAAAAATCCCGATCTATCAGCACAATCTTTCTTAGCCTGGTGAGAAGGCTGAATAATCTAAATTCTAGCAGATCTATGTTCAAG
TTGGAGACAACAATCTAGATAAGTGTAGATGAATCAACAACAATAAACGAATTTCAGAGTAGAGCCGACAGGCAACCACGAGGCCGAACCATGATTAAGC
TAGTAATAGTAAATAAATCCAGAATCAGGATCGTATAAGAACAAAACACAAAACATTAACTTCGAACGGAATCAACTAGCTACACACCTAGATGGCTAGA
TGGACCGAACCAGCACAATCTCTAGCCTGGTGAGAGGTCTAGATAGCCCAGATTCTAGCATATCTATGCTCAAGTGGGACACAACAACCTAGAAAAGTGT
AGATGAATCAACAATAATAATATCAACAATTCAGAGTAGAACCGACAGGCAACTACAAGGCTGAACTATGAATAAGCTCGTAAATAAATCCGGAATCTGG
AACCTATACAAGTACAAGAGCCCAAGTTTATCTACTGGATAATCCATACATAATCGCTTTGGGGATTTAACAACAGACGAGCAGAATCAACTTAGGCTAC
AAGAACACGACACACAACAAACGAGCGAAATCAACCCCAGCTACACATATCTAGATGGACCGAATCAACAACAAACGGCGGATCTACTCGATGGTCGATG
CATAATCGAATCGACAGCAATCGATCGACAAATAGTATGCCTTCAGCCCGCAGATCTACCCAATAGAACGTAAATCGAGCGGAATCGGAAGGCGGAGGGA
TCGGAAACTCGCATACCTTGAAGGAGGACGAGAGGGCCTTGGCTTTCAATCGGTCGAGGAATTTCCCGGTGAGATCGCGGAGAGGGGATTGGATTGGTTT
GGTTTGGTGGACGGGAGAGGAGAGGGGGGCGGGGATTTTGTAGTCGGGGATGGGAGGCCGGGTCAGACGGGAACGGAGGAAGAGTCGCGCAAGG