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Detailed information on CNT30308436


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521912Triticum aestivumSetaria italica48.8100.8788.18347forward
CNT30401480Triticum aestivumTriticum turgidum89.7388.4999.37638forward
CNT30439866Triticum aestivumAegilops tauschii33.4798.7694.54238reverse complement
CNT30667262Triticum aestivumTriticum dicoccoides27.1496.5100193forward

Expression of CNT30308436

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPNRRPMYKKEKFFGFEEKKRILLIFIFHLFS*

>peptide 2 (34 aa)
MKLKLLKRANKNKETTLLTMIYFYLGGRVLLIFI*

Sequence

>CNT30308436
TTGTCTATTTCAAGAATAGATTGGATCTATCCGGCTGCACTTTATAATATTTTTTAGTATTTTTCGGATAAATAAGAAAAGGGTGCACGATCTCGACGAA
TTACTTCTGAATAAATTCAGAAATCATATGGAAGAACCATAGCATTTCGCGACTCATTGGTAAATCAACTTTGATTCTCTATAAACCAAGAATGTGAGAC
CATTAACACGGTTAAAGCTAAACTGCTTGAAGTCCAGGCAAAAAGAGGTACTCTTTCTACAACTATATTAGTATTAGTACCGAATTTAAACGGGAAATAG
CTAATGTAAAATTTATCTGATATAGAACACTCATATCGATAAAATGGTTTGAACTATTTACTAGAAAAAAAAGGGGGCACCCTGCCCTTTTTTAACCAAT
GCCGAATCGACGACCTATGTATAAAAAAGAGAAATTTTTTGGATTTGAAGAAAAAAAAAGAATTCTATTAATTTTCATTTTCCATTTATTTAGTTAGTTT
TTCTTAATGAAATTGAAATTATTAAAGAGGGCAAATAAAAATAAAGAAACAACTTTGCTGACCATGATATATTTTTATCTAGGCGGAAGAGTCCTCTTAA
TATTTATCTAGTCTTATATAGGTTTCGGTATATTGAAATATAAACATAAAAAAGAAGATAGAGGATAGGCTCATTACTTAAAAAAAAGATATGGAAATAG
CTATAGAAAAA