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Detailed information on CNT30307860


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226915Triticum aestivumHordeum vulgare63.97392.28492forward
CNT30668444Triticum aestivumTriticum dicoccoides84.5593.5394.16651forward
CNT30141701Triticum aestivumLolium perenne60.5263.8494.21466forward
CNT30723091Triticum aestivumTriticum spelta75.8477.35100584forward

Expression of CNT30307860

Peptides detected in this lncRNA

>peptide 1 (79 aa)
AMRGLIHSSPKLLHTSRSLKIQTITLHHSMVQKQRQFRQRQTQTRLHWRIPETPRLVNPETEAAPWPGAYWPPRRRSTK*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSRVMVLPVRVFTNICMPPRSLSTKWRVDSFWML*

>peptide 3 (44 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSRVMVLPVRVFTKICI*

>peptide 4 (63 aa)
MARSLLATTETEHQVKGGLLLDVVVRQGAAILKLLTGKDETLLVRGNALLVLDLRLHVVNGVR*

Sequence

>CNT30307860
GCTATGCGAGGTCTTATTCATAGTTCACCAAAGCTGCTCCACACCAGCAGAAGTTTGAAGATACAAACGATAACACTGCATCACAGTATGGTACAGAAAC
AAAGACAGTTCAGGCAACGACAGACACAGACCAGACTCCATTGGAGGATACCGGAGACACCGAGACTTGTGAACCCAGAGACAGAAGCAGCTCCATGGCC
AGGAGCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTA
CCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGATGACTCCACCTCCAGGG
TGATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCATGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC
AAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCG
ATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCATCTGAGGAGGAGGAGAGAGCCTTGGCTTCGCTT
CGCTTCAATCGGAGACTTCTCGGCGAGATCGGAGGGGGGCTGGATTGGATCGGATCGGATGTGTGGGGAG