Detailed information on CNT30307554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L7Z9|DIT2_SPIOL, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678071Triticum aestivumSetaria viridis37.3417.4583.41205forward
CNT30521811Triticum aestivumSetaria italica22.0417.5485.95121forward
CNT30466486Triticum aestivumSaccharum spontaneum50.4677.8188.45277forward
CNT301414Triticum aestivumZea mays34.4342.0988.89189forward

Expression of CNT30307554

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RQRLDNGKEHPSSPRRGAGHGRRDACLTDGETVG*

>peptide 2 (32 aa)
DSDLTMGRNTPPALAVVLGMAGAMHASLMVRP*

>peptide 3 (79 aa)
MTMSQMTSLVNAPNAAVKGSVPVATVAVRPRNAHAPTGSGPRTSPAMVERKMERSCHACGVTSGGRGGGRRRCGLSVGA*

>peptide 4 (70 aa)
MPTRRRGAGRGRALRWWRERWRGAATPAESPRGAAAGAGAGAGSVLGLEAWVADAEARRGWRWRRGAREM*

Sequence

>CNT30307554
GCGACAGCGACTTGACAATGGGAAGGAACACCCCTCCAGCCCTCGCCGTGGTGCTGGGCATGGCCGGCGCGATGCATGCCTCACTGATGGTGAGACCGTA
GGATAGGCCCAGAGTGCTTCCACCCAACCACTTGACGAAGTAGGTGGCAACGCGGTCGCCGAGGCCGGTCTTGACGAACCCCCGTGCAAAGAAGAAGGAG
ATGACGATGAGCCAGATGACCTCGTTGGTGAACGCCCCGAACGCCGCGGTGAAGGGGAGCGTACCCGTGGCCACGGTAGCAGTGAGGCCGAGGAATGCCC
ACGCGCCGACGGGGAGCGGGCCGAGGACGAGCCCTGCGATGGTGGAGAGAAAGATGGAGAGGAGCTGCCACGCCTGCGGAGTCACCTCGGGGGGCCGCGG
CGGGGGCCGGCGCCGGTGCGGGCTCAGTGTTGGGGCTTGAAGCTTGGGTGGCGGACGCGGAGGCCAGGAGAGGATGGAGGTGGCGGCGAGGGGCGAGGGA
GATGTGAGGGGAGATGGGGCGGCAGAGGGAGAGAGAACTAGTGGAGGGC