Detailed information on CNT30307233


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLC0|PER52_ARATH, E-value = 3e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673938Triticum aestivumSetaria viridis17.9649.1789.83118forward
CNT30554242Triticum aestivumOryza glaberrima24.3533.3385160forward
CNT30688208Triticum aestivumTriticum urartu56.4797.1296.23371forward
CNT30348098Triticum aestivumEragrostis tef60.1248.5987.34395forward
CNT30368355Triticum aestivumSorghum bicolor59.8269.887.79393forward
CNT30102121Triticum aestivumOryza rufipogon32.8827.3488.43216forward
CNT30583621Triticum aestivumEchinochloa crusgalli30.1429.0783.84198forward

Expression of CNT30307233

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAVTKSAENWLGLLLYCLTSASCDPPLKSSWSECRRPRCPTRFW*

>peptide 2 (30 aa)
SFSLVMMIAPSHYSVLMMLMMIHFYDQRTF*

>peptide 3 (35 aa)
MRCRTRRRSARRRARGCRCRRTAGTSAAAAPRSWR*

>peptide 4 (57 aa)
IFFSYDDCTIPLFCIDDVDDDTLLRPTYILILCSLHVRPGLSKRAFVHLVFFFIHTH*

>peptide 5 (52 aa)
MRLRKNWHCDRPMVCAPESAVMSRGDRFLLPNMVMSVARLEPGPGRFALAAL*

Sequence

>CNT30307233
TCATTTTCTTTAGTTATGATGATTGCACCATCCCATTATTCTGTATTGATGATGTTGATGATGATACACTTTTACGACCAACGTACATTTTGATACTTTG
TAGTTTGCACGTTCGCCCCGGATTGAGCAAACGAGCGTTTGTACATTTGGTGTTCTTCTTCATACATACACATTAACACATACATACCAGGCCGCCCATC
TTAAGCATGGCCGTGACGAAGTCGGCGGAGAACTGGCTGGGGCTGTTGCTGTACTGCCTCACCAGCGCATCCTGCGACCCGCCGTTGAAGAGCTCCTGGT
CCGAGTGCAGGAGGCCGCGCTGCCCCACCAGGTTCTGGTAGTATGCGTTGTCGAACCCGTCGGCGGTCTGCACGTCGAAGGGCGCGAGGTTGCCGTTGCC
GCCGGACCGCGGGCACGTCCGCTGCCGCAGCGCCGCGAAGCTGGCGTTGATGTTGCGCTCGTTGTAGATGCGGTTGCGAAAGAACTGGCACTGCGACCGC
CCGATGGTGTGCGCGCCGGAGAGCGCCGTCATGTCCCGCGGCGACAGGTTCTTGTTGCCGAACATGGTGATGAGCGTGGCGAGGCTGGAGCCGGGCCCCG
GCAGGTTCGCGTTGGCCGCGCTCTGACTCGCCGTGCGCGAGTCCTTGCGCCCCAGCG