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Detailed information on CNT30306465


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191122Triticum aestivumSecale cereale99.3468.7590.35902forward
CNT30399278Triticum aestivumTriticum turgidum69.3896.77100630forward
CNT30242670Triticum aestivumAvena sativa75.9974.6893.48690forward
CNT30669573Triticum aestivumTriticum dicoccoides10092.5696.92908forward
CNT30364163Triticum aestivumSorghum bicolor75.9975.1688.12690forward
CNT30595768Triticum aestivumOryza meridionalis75.1149.689.59682forward
CNT30110940Triticum aestivumOryza longistaminata72.4724.2688.6658forward
CNT30100520Triticum aestivumOryza rufipogon75.8869.4689.26689forward
CNT30116852Triticum aestivumOryza nivara73.7956.487.76670forward
CNT30604305Triticum aestivumOryza punctata75.7776.0288.23688forward

Expression of CNT30306465

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCWSGGMPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKIC

>peptide 2 (61 aa)
SNCRHNSGLTYLSSSPKLLHNSFSFQIQLNITMHHSTVETKKRPGQQTQAPLEAIPKTQDL*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSDDSTSKVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (53 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 5 (49 aa)
MEGGLLLDVVVSQGAAILKLLTSKDEALLVRGDALLVLDLGLHVVDGVR*

Sequence

>CNT30306465
CAGCAACTGCAGACACAATTCAGGCCTCACTTATTTATCAAGTTCACCAAAGCTGCTTCACAACAGCTTTAGTTTTCAAATACAACTGAACATAACGATG
CATCACAGTACGGTAGAAACAAAGAAACGACCAGGACAACAGACACAGGCACCATTGGAGGCCATACCGAAGACACAAGACCTGTGAACCCGCACAGAAG
CCGCTCCATTGCCAGGTACTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCATC
CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGGAC
TCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGA
TGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGC
CTTCACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCATGCCTCCACGAAGGCGGAGG
ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGG
GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAA
AATCTGCA