« Back to Triticum aestivum search


Detailed information on CNT30305698


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317753Triticum aestivumCorylus avellana52.1140.881.34284forward
CNT30703567Triticum aestivumQuercus lobata43.8547.3384.94239forward
CNT3069058Triticum aestivumQuercus suber48.9930.5183.52267forward
CNT3042757Triticum aestivumPrunus dulcis52.6647.3682.93287forward
CNT30331117Triticum aestivumDioscorea rotundata54.8631.5780.94299forward

Expression of CNT30305698

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MSPEMRFTPPRRASRRIAGLVMPWMLSRSTFRCRLAPPLPSPFPPLPRLDISGASLSGDLPWLVVVCALLVWWWLLRPCC

Sequence

>CNT30305698
GTAAAATTCTGTGATTTTCCTTCTATCATAGTACTGTACATCCAGACACTGAACGCTGAACAACAGCAGCGAGATTGAACACTGAACAACCATAGCTAGC
TGCGGTACGAATCTGGCTGGAGGCGCGAGGTGGATTCGACTGGACCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTCAGCGCGTAGACGACG
TCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTCACGGCGTCGCGGATGACGTTCTCCAGGAAGATCTTGAGCACGCCGCGGGTCTCCT
CGTAGATGAGCCCTGAGATGCGCTTCACGCCGCCACGCCGCGCCAGCCGCCGAATCGCCGGCTTGGTGATGCCCTGGATGTTATCGCGCAGCACCTTCCG
GTGCCGCTTGGCGCCGCCCTTGCCCAGCCCCTTCCCTCCCTTGCCGCGGCTAGACATCTCCGGCGCTTCTCTCTCCGGCGACCTTCCTTGGCTAGTGGTT
GTGTGCGCGCTGCTGGTCTGGTGGTGGCTGCTGCGGCCGTGTTGT