Detailed information on CNT3030551


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235444Theobroma cacaoBrassica oleracea15.0421.1987.7257forward

Expression of CNT3030551

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRESQTSSSPVEATPTVTKMVFSCIKHYTKK*

>peptide 2 (40 aa)
LNNLSRVRSGRYERVSNFFFPSGGHTYSHKNGIQLHQALH*

>peptide 3 (53 aa)
MHCTLPPLLAREVMSLLALPVNGATMLACAGEARLTVATVADEIIEEAIADATY

Sequence

>CNT3030551
CTTAAACAACCTCTCTCGAGTGAGATCAGGGAGGTATGAGAGAGTCTCAAACTTCTTCTTCCCCAGTGGAGGCCACACCTACAGTCACAAAAATGGTATT
CAGTTGCATCAAGCATTACACTAAAAAATAATAGCGATGAAAATTAGGCTTATGCACTGTGTTCAATTTAGTTGCTAATTGCTGTGCATAACCATATAGT
TGCACCAAGTACCTGCATGCATTGCACTCTGCCACCATTGCTTGCGAGAGAAGTAATGTCGTTGTTGGCCTTGCCGGTGAATGGGGCGACCATGCTGGCC
TGTGCCGGGGAGGCACGGTTAACGGTGGCGACGGTTGCCGATGAGATCATTGAGGAAGCCATTGCTGATGCTACTTACT