« Back to Triticum aestivum search


Detailed information on CNT30305143


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191096Triticum aestivumSecale cereale85.9662.6991.33588forward
CNT30140780Triticum aestivumLolium perenne69.4456.9594.53475forward
CNT30346176Triticum aestivumEragrostis tef68.2725.6791.86467forward

Expression of CNT30305143

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RAHLFIKFTKAVHNSSNSQKQPNITMHHTTVET*

>peptide 2 (48 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICKQQS

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 4 (78 aa)
QGSLIYQVHQSCSQQQQFSKTTEHNDASHYGRNIETTRTTDTGTIRGHIKDTRPVNPTHREAAPLTGTYWPPRRRSTK*

Sequence

>CNT30305143
TCAGGGCTCACTTATTTATCAAGTTCACCAAAGCTGTTCACAACAGCAGCAATTCTCAAAAACAACCGAACATAACGATGCATCACACTACGGTAGAAAC
ATAGAAACGACCAGGACGACAGACACAGGCACCATTCGAGGACATATCAAAGACACAAGACCTGTGAACCCAACCCACAGAGAAGCCGCTCCATTGACAG
GCACTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACC
AGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCAACCTCCAGGGTG
ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGCCCCCACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAA
GGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGAT
GGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAACAACAAAGCAC