« Back to Triticum aestivum search


Detailed information on CNT30305074


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 9e-66

BLAST vs NONCODE:
NONSLYT002404, E-value = 4e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675843Triticum aestivumSetaria viridis23.2934.6894.52146forward
CNT30378101Triticum aestivumArabidopsis thaliana50.2435.7184.13315forward
CNT30729348Triticum aestivumCorchorus capsularis22.8115.884.62143forward
CNT30711421Triticum aestivumGlycine max29.9865.5186.7188forward
CNT30158908Triticum aestivumPistacia vera38.4414.7583.82241forward
CNT30554643Triticum aestivumOryza glaberrima16.1121.2690.1101forward
CNT3082269Triticum aestivumBrassica juncea20.4119.7581.25128forward
CNT3013256Triticum aestivumZea mays14.3522.9694.4490forward
CNT30652736Triticum aestivumRosa chinensis35.5738.5186.1223forward
CNT30212676Triticum aestivumHelianthus annuus15.9528.1783100forward
CNT30371090Triticum aestivumOryza glumipatula15.4720.1290.7297forward
CNT3055928Triticum aestivumAmborella trichopoda31.4222.4486.29197forward
CNT30594767Triticum aestivumEragrostis curvula8.9321.7194.6456forward
CNT30724231Triticum aestivumLupinus angustifolius11.1628.239070forward

Expression of CNT30305074

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MHTPSRPPPSCSRRRPPPAAACPCQPQQPPRPRRCSGPPWWQRPTSFPQTP*

>peptide 2 (48 aa)
MSVSASAASSSSSMLRPSLVAETNFFPSNSLSWPMEYSSMASTMYSTS*

Sequence

>CNT30305074
CAAAAATTAACTCGAAAGCACTAAAGATGATATATATAAGCAACGATTACGATACGCAGTTCCGGGGACTCCACAGACCACTCCCCTAGCCCCATTAGGG
CAGGCTAGGCACAGTAAACCACAAAAGACAAACCGACCACGCGACAGTAACCCAAAAGATAAGCTAGCTCTAGTACTCGGATAGCAAGCAAATGCACACG
CCTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCGTCCTCCTCCAGCGGCGGCATGTCCGTGTCAGCCTCAGCAGCCTCCTCGTCCTCGTCGATGCTCAG
GCCCTCCTTGGTGGCAGAGACCAACTTCTTTCCCTCAAACTCCTTGAGCTGGCCAATGGAGTACTCATCAATGGCGTCAACCATGTACAGCACCTCGTAG
CCCTTCTTCTTCAGCTTCTCAAGGAAGGGAGAGTTCTCCACAGCCTTCTTGCTCTCACCGGTGATGTAGTAGATGTCGTTCTGGCCCTCCTTCATCCTCG
TCACATAGTCCTTGAGGCTGGTAAGCTCATCGCCACTCTTGGTGGAGTGGTACCTCAGGAGCTCAGCAAGCTTGGTCCTGTTGGTGGAGTCCTCATGGAC
GCCGAGCTTGAGGTTCTTGGAGAAAGC