Detailed information on CNT303048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675796Zea maysSetaria viridis45.5845.4885.2196forward
CNT30701953Zea maysQuercus lobata13.9521.7488.3360forward

Expression of CNT303048

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRRSPSHSPWRRFLSSETCRRRLGFERFPDREGE*

>peptide 2 (52 aa)
MRHLVDLLHLAFTSVVLKLRHLSLCLNRLVLIDAQTEFEHAVDPVAEGVDDE*

Sequence

>CNT303048
CCTGGCCAGCAGGACAACCGATAACGTGCCAAAAACCTCGAACAATAGTGAAAATTAAGCTATCACAGGTAGCTTAGCTAGGGATAAGATAAACGGCAAG
CATGCGATGCGACACTTAGTCGACCTCCTCCATCTTGCTTTCACCAGCGTCGTCCTCAAGCTGAGGCATCTCAGCCTCTGCCTCAACAGGCTCGTCCTCA
TCGATGCTCAGACCGAGTTTGAGCATGCGGTGGATCCGGTTGCCGAAGGTGTTGATGATGAGTGAGAGCAGCTGGTTGATCTCAGCCTGAAATGCGAAGG
TCTCCGTCTCACTCGCCATGGCGCAGATTCCTGAGCTCTGAAACTTGCAGGAGGCGGCTAGGGTTTGAGAGGTTTCCGGATCGAGAGGGGGAGTGAGGTT
AGGGGTAGCGGAGTATTTATTCCGTGCCGC