Detailed information on CNT30304673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Triticum aestivumSecale cereale13.7475.5995.65161forward
CNT30459409Triticum aestivumSaccharum spontaneum12.1240.1186.62142forward

Expression of CNT30304673

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGRLRPRGIHVLRRRLSWRFVTAVVNQHKRWHA*

>peptide 2 (32 aa)
MVELGHLCLLKYVQGNWERILNFENLFPDVKL*

>peptide 3 (39 aa)
MALMGRCLRGADGEVETSWNPCSQAEAKLAICHCSCESA*

>peptide 4 (45 aa)
MARLGAEGLARSRWIVGAAISLATLRGFVKVDGEPLQGDVVAFFF*

>peptide 5 (36 aa)
MVVSTGRTIMCLREPPIDAPCEVMLTFSFLFGKVME*

>peptide 6 (44 aa)
MGHHNRDFLASCAVAVSSLLTPFARPQCEIGNLVRKCLNDPING*

>peptide 7 (43 aa)
RECLVSGASGRLRRGFELLHVVAPSMRRQLHYLQGSYKIYGSS*

Sequence

>CNT30304673
CGGGAATGCTTGGTCTCGGGCGCGTCTGGCCGCCTGCGCCGAGGGTTTGAGTTATTGCATGTGGTGGCACCAAGCATGAGGCGACAACTGCATTACTTGC
AAGGAAGTTACAAAATCTATGGGTCATCATAATCGTGACTTTCTTGCAAGTTGTGCAGTTGCTGTCTCAAGCTTGCTGACTCCGTTTGCCAGACCGCAAT
GTGAAATAGGAAATTTAGTCAGGAAATGCCTAAATGATCCAATAAATGGTTGAATTGGGCCACTTATGTCTTCTTAAATATGTTCAAGGAAATTGGGAAC
GTATTCTTAATTTTGAGAACTTGTTTCCAGATGTAAAACTTTAATCGGATATCTCTATACTTAAAAGGGTACTAGTGGATTAAGGATACAAGAGTGCATC
CTAAGTTGCAATGGTTGTATCCACGGGAAGAACAATTATGTGTCTACGAGAACCTCCAATTGATGCACCATGTGAAGTCATGTTGACATTTTCTTTTCTC
TTTGGTAAGGTTATGGAATAAATTTTATTTTCCCTAGTATTGTGTTAGTGGTGTATATATTCACTAAACAAGGTTCTTCCATTCCTCTGTTTCCATATGC
CGCTGCACCATCATCCACTGCCATGCTGAGGTGGTGGAGATTAGCAGGCAGCAGTCTTAATGGCGTTGATGGGGAGGTGTCTTCGCGGTGCTGATGGGGA
GGTTGAGACCTCGTGGAATCCATGTTCTCAGGCGGAGGCTAAGTTGGCGATTTGTCACTGCAGTTGTGAATCAGCATAAGAGATGGCACGCTTAGGTGCC
GAGGGCCTCGCTAGATCCAGATGGATTGTAGGAGCCGCAATCTCGCTCGCCACTCTGCGGGGGTTTGTCAAGGTTGATGGCGAGCCTCTACAGGGTGATG
TAGTGGCTTTTTTTTTTTGAAAAAACTCAGACTTTATTCATTTGTAATAAGTAATACATCGTTTGTGAGGATCATTACAATTTCATTTAAGGGCTCCTCA
AACCAATCGGAAGTCAAAGAAAATCTAGCTGGAAATCAGGGTGAATGGGTGATGTAGTGGCTAGTCTGGATGAATAGGCAGAGGAAAGGCTGACGGGACG
AAATGACCCTCCTTACTTGATCAGGTTATGTATGGTGTTCCTGGTGGTGGAGTTGGGCACAGTCTGAAACCG