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Detailed information on CNT30304662


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 3e-74

BLAST vs NONCODE:
NONBRAT001321, E-value = 8e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315797Triticum aestivumCorylus avellana60.7847.3581.79313forward
CNT30547549Triticum aestivumIpomoea triloba59.2239.4179.02305forward
CNT30376827Triticum aestivumArabidopsis thaliana22.5249.1581.9116forward
CNT30125320Triticum aestivumPhyscomitrium patens20.781186.92107forward
CNT30591253Triticum aestivumMusa acuminata23.1138.1490.76119forward
CNT30443502Triticum aestivumAegilops tauschii66.0254.9396.47340forward
CNT30255419Triticum aestivumAvena sativa63.561.3595.41327forward
CNT30613891Triticum aestivumArabis alpina20.3926.0583.81105forward
CNT30474628Triticum aestivumSaccharum spontaneum58.8325.4892.08303forward
CNT30141675Triticum aestivumLolium perenne62.5236.0694.1322forward
CNT30609694Triticum aestivumGossypium raimondii24.8516.7181.25128forward
CNT30686633Triticum aestivumTriticum urartu18.2533.9498.9494reverse complement
CNT30596421Triticum aestivumOryza meridionalis25.8318.9595.49133forward
CNT30358587Triticum aestivumLactuca sativa2018.7685.44103forward
CNT30148402Triticum aestivumBrachypodium distachyon30.2931.7794.23156forward
CNT30114434Triticum aestivumEutrema salsugineum20.1926.1386.54104forward

Expression of CNT30304662

Peptides detected in this lncRNA

>peptide 1 (35 aa)
HRKQERPSTAIRNKLQPEATHSTSDPLTALTGRTA*

>peptide 2 (89 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTRYASAASWRASTAWDWKRRSVLKSCAISRTRRWNGSLRISSSVLFWYLRISRRATVPGL*

Sequence

>CNT30304662
CACAGAAAACAAGAGAGACCTAGCACGGCAATTAGGAACAAACTACAACCGGAAGCAACACATTCCACTTCCGATCCACTAACAGCGTTGACGGGGAGGA
CGGCTTAGGAACAAACTACAACCGGAAGCAACACATTCCACTTCCGATCCACTAACGGCGTTGACGGGGAGGACGGCTTAGGCCCTCTCGCCACGGATGC
GGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCGACGAGGTACGCCTCGGC
CGCCTCCTGGAGGGCCAGCACGGCGTGGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGCGCGATCTCGCGGACCAGGCGCTGGAACGGCAGCTTGCGG
ATCAGCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCCCGGAGGGCGACGGTCCCGGGCCTGTAGCGGTGGGGCTTCTTCACTCCGCCGGTGGTCGGCG
CCGACTTCCTCGCCG