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Detailed information on CNT30304287


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-94

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225636Triticum aestivumHordeum vulgare64.5369.5290.41584forward

Expression of CNT30304287

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSR*

>peptide 2 (33 aa)
AAAASKSSISPNEFASTFIQNPKTTNYSPERQS*

>peptide 3 (53 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

>peptide 4 (92 aa)
PQQHPNLAFHLTSSHQHSFRIQKLRTTAQKGNHKSTYSQTRTAKANEHRHITFKVDLFILHLTVQMYLQLFAPNHRTRWSIKPDTVHKRDNT*

Sequence

>CNT30304287
GCCGCAGCAGCATCCAAATCTAGCATTTCACCTAACGAGTTCGCATCAACATTCATTCAGAATCCAAAAACTACGAACTACAGCCCAGAAAGGCAATCAT
AAATCCACATATAGCCAGACAAGAACTGCAAAGGCAAATGAGCACAGGCACATTACGTTCAAAGTTGACTTATTCATACTCCACTTAACGGTACAGATGT
ACCTGCAACTGTTTGCACCAAACCACAGGACTCGATGGTCCATTAAACCAGACACAGTACACAAACGAGACAACACTTGAACAAAGGCGCACCCACAGGA
CGACACAGGGTACAGCAGCAGCAGCAGGTCGAAAGATAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGT
TGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT
GACATTGTCGATAGTGTCGGAACTCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGCAGACGCAGCACA
AGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAA
TGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCCACCTCAAGGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGC
AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGGCGCTGCT
GGTCC