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Detailed information on CNT30304238


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30253103Triticum aestivumAvena sativa60.8962.9694.83464forward
CNT30460114Triticum aestivumSaccharum spontaneum61.2931.1590.36467forward
CNT30150050Triticum aestivumBrachypodium distachyon61.4234.9893.16468forward

Expression of CNT30304238

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPSLSWILALTLSMVSDDSTSRVMVLPVSVFTKICICKEESQIGW*

>peptide 2 (57 aa)
TYSQTRTAKANEHRHITFKVDLFILHLTVQMYLQLFAPNHRTRWSIKPDTVHKRDNT*

>peptide 3 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30304238
ACATATAGCCAGACAAGAACTGCAAAGGCAAATGAGCACAGGCACATTACGTTCAAAGTTGACTTATTCATACTCCACTTAACGGTACAGATGTACCTGC
AACTGTTTGCACCAAACCACAGGACTCGATGGTCCATTAAACCAGACACAGTACACAAACGAGACAACACTTGAACAAAGGCGCACCCACAGGACGACAC
AGGGTACAGCAGCAGCAGCAGGTCGAAAGATAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT
CGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT
GTCTATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGCAGACGCAGGACAAGGTGG
AGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCT
CCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGTGTCTTCACAAAGATCTGCAT
CTGCAAAGAAGAATCACAGATAGGATGGTAAGCATAAAAGAAGCAGACCAGGCAAACTCGCA