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Detailed information on CNT30304171


BLAST search results

BLAST vs Swiss-Prot:
sp|P55308|CATA2_HORVU, E-value = 8e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519943Triticum aestivumSetaria italica52.5827.686.21377forward
CNT30185311Triticum aestivumSecale cereale47.5624.2498.24341forward
CNT30592095Triticum aestivumMusa acuminata20.0848.8186.81144forward
CNT30552865Triticum aestivumOryza glaberrima24.4164.5892175forward
CNT30243876Triticum aestivumAvena sativa5350.4691.32380forward
CNT30139766Triticum aestivumLolium perenne19.828.9895.07142forward
CNT30347744Triticum aestivumEragrostis tef43.5119.9287.18312forward

Expression of CNT30304171

Peptides detected in this lncRNA

>peptide 1 (78 aa)
EEVDPDDAELVADLGVGERVGEAAHEPVLAVGRPAAVPLPGLHEVVLLLDPRLLPFSDDGPRGHGEAGRLGVPERRVA*

>peptide 2 (80 aa)
RKSIQMTRSSWLTLGWASASAKRRTNLSWRSGAQLRYLSPGCTKSFSFLILVFSLFPTTGRVGTGKLAGSACRSGAWRDG*

Sequence

>CNT30304171
GAGGAAGTCGATCCAGATGACGCGGAGCTCGTGGCTGACCTTGGGGTGGGCGAGCGCGTCGGCGAAGCGGCGCACGAACCTGTCCTGGCGGTCGGGCGCC
CAGCTGCGGTACCTCTCCCCGGGCTGCACGAAGTCGTTCTCCTTCTTGATCCTCGTCTTCTCCCTTTTTCCGACGACGGGCCGCGTGGGCACGGGGAAGC
TGGCCGGCTCGGCGTGCCGGAGCGGCGCGTGGCGTGACGGGTAGTAGTCCACCTCCTCGTCGCGGTGCATGAAGTTCATGGCGCCGTCGTAGTGGTTGTT
CTTGAAGCCGCACTTGGGCGCGTTGACGGGGAGCATCAGGTCCTCGGGCCAGGTCTTGGTGTCGTCGAGCGGGTCGAAGTCGAAGCGGTCCTCGTCGTCG
GGGTCGATGACCTGCACGAAGAGCTTCCACTCGGGGAAGTTGCCGGCGTCGATGGAGTCGTAGAGGTCCTGGGTGGCGTGGCTGTGATTCTTGCCGCCGA
CGAGGGTGGCCTCGTCGTCCATGAGGCAGCTGACGCCGCAGGTGGGCCTCCAGTGGAACTTGACGTAGTGGGACTTGCCAGCGCGGGAGACGAAGGTGTA
GGTGTTGACGCCGAAGCCGTCCATGTGGCGGTAGTCGGTGGGGATGCCGACGTCGTCGAAGAGGAAGAAGAAGGTGTGGAGGCTCTCCGGGTGGTGGGAG
AGGAAGTCGAAGACGCG