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Detailed information on CNT3030385


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 2e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Theobroma cacaoQuercus lobata29.0727.5587.07116forward
CNT30381108Theobroma cacaoManihot esculenta38.627.683.77154forward
CNT30524888Theobroma cacaoPhaseolus vulgaris25.5626.9188.24102forward
CNT30628905Theobroma cacaoVigna unguiculata24.316.7985.5797forward
CNT30507146Theobroma cacaoNicotiana attenuata24.569.2184.6998forward
CNT30156273Theobroma cacaoPistacia vera42.6122.5286.47170forward
CNT3096662Theobroma cacaoSolanum tuberosum23.0610.0984.7892forward
CNT30564018Theobroma cacaoActinidia chinensis31.8317.8982.68127forward
CNT30171495Theobroma cacaoTrifolium pratense24.5611.9485.7198forward
CNT30610101Theobroma cacaoGossypium raimondii54.148.2989.81216forward
CNT30646903Theobroma cacaoRosa chinensis32.839.9184.73131forward
CNT30355925Theobroma cacaoLactuca sativa21.0518.7586.984forward
CNT30705527Theobroma cacaoPrunus avium31.332787.2125forward
CNT30645210Theobroma cacaoCannabis sativa24.5612.9582.6598forward
CNT3022855Theobroma cacaoPopulus trichocarpa43.1124.8287.21172forward
CNT30114125Theobroma cacaoFicus carica36.8419.0487.76147forward

Expression of CNT3030385

Peptides detected in this lncRNA

>peptide 1 (66 aa)
TPHSSPSPVVLSPSSLDFFLISSKMNSTQALDMLPYSERTCLVARSFSGLRANLASTWSNIAGPPG*

Sequence

>CNT3030385
GGACCCCCCACTCGAGCCCTTCTCCTGTGGTCTTGAGCCCATCTTCTCTGGACTTCTTCCTCATCTCATCCAAAATGAATAGCACACAAGCACTTGACAT
GTTGCCATACTCTGAAAGAACGTGCCTCGTGGCTCGTAGCTTCTCAGGCTTGAGGGCCAACTTGGCTTCTACCTGGTCCAATATCGCTGGGCCACCAGGG
TGAGCGATCCAGAAAAGGGAGGGCTGGAATGCCTCAGCCAGGCTCTTTTCAATATTCTTGGAGATAAGCCCGGGAACATCCTTGAGGAGGTGAAATGTAA
GCCCAACTTCACGAAGGTGACCATCGATAGCCCCATCACTGTCTGGCAAGATTGTTTGGGCTGCTGAGACTAGTTCAAACATGGGCTTCTCGATCTCGG