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Detailed information on CNT30303356


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-94

BLAST vs NONCODE:
NONMTRT002042, E-value = 6e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190515Triticum aestivumSecale cereale84.9493.5691.07784forward
CNT30667188Triticum aestivumTriticum dicoccoides50.3834.0994.41465forward
CNT30107357Triticum aestivumOryza longistaminata50.1661.9892.22463forward
CNT30550711Triticum aestivumOryza brachyantha50.1666.1492.01463forward

Expression of CNT30303356

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MGTRWSIKPDSVDLIRTRHMTNSSRSNVRAITDHHGGGAPGGGWTPSGCCSRQGCGHPPAACQQRSGAAGQGGCLPCPGSWP*

>peptide 2 (29 aa)
MYRTCKTLVISREHWELQPIKCIHRKPLL*

>peptide 3 (32 aa)
MHSQKTAIVRSLLVLLDKNWKQSFNREISNQQ*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVNVFTKIC

>peptide 5 (44 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTR*

Sequence

>CNT30303356
TTTTTGAAGTACTGAACTAGAAGCATCCACTTTTATTCAAAGAATCATAGGATTTTTTTCTCAAGGAATCCATTGCACGAGCAAAGACACAAAACACTAC
GCTTACAGAGGGTGAACACAGCAGCATCCAAGTAGAAGAAACATGTATAGAACTTGCAAAACTCTAGTGATTTCACGGGAACATTGGGAGCTACAGCCCA
TTAAATGCATTCACAGAAAACCGCTATTGTAAGATCACTGCTAGTTTTGCTAGATAAAAACTGGAAGCAATCATTCAACCGGGAGATATCAAATCAACAG
TAAAATAAACAAACATATTGGTTCAAACTTAATTCATACCAAACCATACCAGATAACTGTTTCACACATCATGGGGACTCGATGGTCCATCAAACCAGAT
TCGGTAGACTTAATACGAACAAGACACATGACTAACAGCAGCAGGTCCAACGTCAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGT
GGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTG
TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATACCAC
CACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCG
CTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCAGTC
AATGTCTTCACAAAGATCTGCAT