Detailed information on CNT30302672


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-94

BLAST vs NONCODE:
NONMTRT002042, E-value = 4e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460404Triticum aestivumSaccharum spontaneum50.0514.690.48462forward

Expression of CNT30302672

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVNVFTKIC

>peptide 2 (82 aa)
MGTRWSIKPDSVDLIRTRHMTNSSRSNVRAITDHHGGGAPGGGWTPSGCCSRQGCGHPPAACQQRSGAAGQGGCLPCPGSWP*

>peptide 3 (44 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTR*

>peptide 4 (29 aa)
MYRTCKTLVISREHWELQPIKCIHRKPLL*

>peptide 5 (32 aa)
MHSQKTAIVRSLLVLLDKNWKQSFNREISNQQ*

Sequence

>CNT30302672
TTTTTGAAGTACTGAACTAGAAGCATCCACTTTTATTCAAAGAATCATAGGATTTTTTTCTCAAGGAATCCATTGCACGAGCAAAGACACAAAACACTAC
GCTTACAGAGGGTGAACACAGCAGCATCCAAGTAGAAGAAACATGTATAGAACTTGCAAAACTCTAGTGATTTCACGGGAACATTGGGAGCTACAGCCCA
TTAAATGCATTCACAGAAAACCGCTATTGTAAGATCACTGCTAGTTTTGCTAGATAAAAACTGGAAGCAATCATTCAACCGGGAGATATCAAATCAACAG
TAAAATAAACAAACATATTGGTTCAAACTTAATTCATACCAAACCATACCAGATAACTGTTTCACACATCATGGGGACTCGATGGTCCATCAAACCAGAT
TCGGTAGACTTAATACGAACAAGACACATGACTAACAGCAGCAGGTCCAACGTCAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGT
GGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTG
TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATACCAC
CACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCG
CTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCAGTC
AATGTCTTCACAAAGATCTGCAT