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Detailed information on CNT30302067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234810Triticum aestivumBrassica oleracea39.2972.9294.2552reverse complement
CNT30154718Triticum aestivumPrunus persica32.8866.6793.72462forward

Expression of CNT30302067

Peptides detected in this lncRNA

>peptide 1 (36 aa)
HMQVERCFRGAGQKEKRLLAKVVSLCFKTTGRALRL*

>peptide 2 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 3 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 4 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRSGAKAWGANMIRYPGSPCRKR*

>peptide 5 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 6 (65 aa)
MMLSWSFRMISHTGTETWPGLPRGAADSRXXXXQSGERVRNAWESAEQFGPNPEESSKALFDEPA*

Sequence

>CNT30302067
AACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCTCTGCTTCAAAACTACAGGGCGCGC
GCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATTGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTT
CGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCATAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAG
CTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACATGGCCCGGACTCCCACGGGGGGCAGCAGACTCGAGGNNNNNNNNNNAACAAAGTGGCGAA
CGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTG
GTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAG
CAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCG
ATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAG
GGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCAAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAAT
TTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGA
GCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGNNNNNNNNNNCACGTAGGCGGTGAAT
CGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCAAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAA
ATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTATCGACGCTCGGGTGCGAAAGCATGGGGAGCAAACATGATTAGATAC
CCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCG
CAAGA