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Detailed information on CNT30301827


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 3e-95

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Triticum aestivumOryza sativa60.1628.992.69465forward
CNT30395844Triticum aestivumTriticum turgidum10049.97100773forward
CNT30349330Triticum aestivumEragrostis tef59.929.8792.87463forward
CNT30595806Triticum aestivumOryza meridionalis59.1273.1292.56457forward
CNT30107350Triticum aestivumOryza longistaminata60.1653.8892.26465forward

Expression of CNT30301827

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVLTKICMPPLRRRTR*

>peptide 2 (43 aa)
MRRCWSGGMPSLSWILALTLSIVSDDSTSRVMVLPVNVFTKICI

>peptide 3 (72 aa)
MQSQRATTVISLLVVKTGRNKPEETFNKHIGSNSLIHTKPYQQLFPRNQHTSSGLMVHQTRYSRLNTNKTQD*

Sequence

>CNT30301827
CATCGATATATAACTTGAAAAATCTAATGATTTCACAGGAACATTGAGAGCTACAGCCCATAAAATGCAATCACAGAGAGCCACTACGGTGATATCACTG
CTAGTTGTAAAAACTGGAAGAAACAAACCAGAAGAAACATTCAACAAGCATATTGGTTCAAATTCACTTATTCATACCAAACCATACCAGCAACTGTTTC
CCCGAAACCAACACACATCATCAGGACTCATGGTCCATCAAACCAGATACAGTAGACTTAACACGAACAAGACACAGGACTAATAGCAGCAGGTCCAACG
TCAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCCAGCTGC
TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGATTCCACCTCAA
GTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC
AGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG
TCGATTGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATCT