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Detailed information on CNT30301288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504973Triticum aestivumNicotiana attenuata47.4582.8898.35605reverse complement
CNT30147862Triticum aestivumBrachypodium distachyon11.2954.75100144forward

Expression of CNT30301288

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQAHQTALLSFLQDLARTVRQIPTRYAPVRHFVLNYS

>peptide 2 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 3 (57 aa)
SIPLSFTLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLIMFAPHAFAPERR*

>peptide 4 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVLRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 5 (88 aa)
MLSHPSVDRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVLRAFRHFLATFTFNPIHRLRXXXXLIRVDQGRTLIVYGMDYQGI*

Sequence

>CNT30301288
CGTCAATTCCTTTGAGTTTCACTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACAC
TCATCGTTTACGGCATGGACTACCAGGGTATCTAATCATGTTTGCTCCCCATGCTTTCGCACCCGAGCGTCGATAGGGACCCAGAGAGCTGCCTTCGCTT
TTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTTGAGAGCATTCCGCCAC
TTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGNNNNNNNNNNCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGG
ACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGA
TCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTTGAGAGCATTCCGCCACTTTTTGGCGACTTTCACT
TTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGG
GGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT
TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCAT
CATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTC
GGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCATGTCTCAGTCCCAGTGTGGCTGATCA
TCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTATGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTT
CAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCC