« Back to Triticum aestivum search


Detailed information on CNT30301278


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395440Triticum aestivumTriticum turgidum97.9584.761001579forward
CNT30666982Triticum aestivumTriticum dicoccoides22.7710099.46367forward
CNT30716144Triticum aestivumMalus domestica golden4.0321.3887.6965forward

Expression of CNT30301278

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHMPEYQLLTDMSSVLSNKHVIPKLPDTFVLIEICLYFCPQLHQQGAI*

>peptide 2 (51 aa)
MVSSCICMIHLEERQHNFHFKSYPLSLRQLLFMNLEAGAAGMGGSSQSSRV*

>peptide 3 (84 aa)
VIPRLFLSPTRVFWIGPDPSRHFRSPAIKGRRAPPDPPSALAPHAPNNPHSWLDGGRSSRRTRDTHVAAPSMRQQLHYLRGRRK*

Sequence

>CNT30301278
CGTCATTCCCCGCCTTTTTCTATCCCCCACTAGGGTCTTCTGGATCGGCCCCGATCCTTCCAGACACTTCCGCTCCCCCGCTATAAAAGGCCGGCGAGCG
CCACCAGACCCTCCATCGGCGCTCGCACCGCACGCACCCAACAACCCCCATTCTTGGCTGGATGGTGGCCGGAGCTCGCGGAGGACTCGAGATACGCATG
TGGCGGCACCGAGCATGAGGCAACAACTGCATTACTTGCGGGGAAGGCGCAAGTAGGACGCCTGCATTACTTGCAAACAAGGCGCAAAATTAATAGAAGA
TCACCATACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAAGCTATCAGAAAAAACATAAAGTTCTGTTAG
TTTCCCTAAACTTTAAAACATGTTCTACAAAATTGATCTAGAAATGATTGGCTTACTGTGCTAATTTAAAGCAATATAATTACTCGACAACTGCATATGC
ACATGTTAGAAGCAAGGCAGTAGAATACTTATGTTTTCATCTGCTGGCAGGTAGCAACACGTATAGATATATCACTCTGAATTGAGTTATGGACCAAACA
TTAAGAACTTCCCACTTTGTTGGCACATCCCATCTGTGAAATTACATATAAATTTATGTACAGGCAGTGTTCTCAGGGTATGGATTCAAATATTTTGGTG
AAAACAGAATAGCTGCTGTAATAATTTTAGAAATATTATGCACACGGAGGATTTTTAATGTGATGGTGCGGCTGCACACCTATAAGCCTCCACCCTTGCC
CTTACCCTCTCTTCTAACCATTTAATTTAAGTAATCCCAACTAGTTCAAGCCTTACTGTACATCAACATGGTCTCATCCTGTATTTGCATGATTCATCTG
GAAGAAAGACAACATAATTTTCATTTTAAGTCATATCCTCTCAGTCTTAGGCAGCTACTATTTATGAACTTGGAAGCCGGCGCAGCAGGTATGGGAGGAT
CTTCACAGAGTAGCAGGGTGTAGCAGAATCAGTGGAGCTCTTAGACGGGAGCAGCTGCGTCAAATGCTATGGTCCCAACTTTGACTTTATTTTCGAACAA
GAGGTGGGGCGGCGGCTGTTTTTTGATGCCGAGCCGCTGAAGTGTGGCTTCAGGAGGAAGGGCGCAATGGCGCAACAGAGTGTCAGTCTACTAGTTATTG
CAGTTACATGCACATGCCCGAGTACCAACTACTGACGGACATGTCTTCAGTCTTGAGTAACAAGCATGTTATTCCGAAGCTGCCCGACACTTTTGTACTA
ATAGAAATCTGTTTATATTTCTGTCCACAACTTCACCAGCAAGGTGCAATTTAGAAGGAAAAATTGAGAGCTTGCCAAACTTAGGTATGTCCGATAGTCT
TATCTTAGCCGTCTGTAAGAATTGCTAGTTAGGAAAGAAGAAAAGAGAGCAATAGTCTTTCTGTAGTTGTATGTACACTCTCTATGATTCTATAGACAAA
TTGCTGATGGTGTCTTTGCTCTTGTCTTAATGTTGTCTGTAACTTCTATCTGCAAACGGCATGTCCAAAACTAGAACCATTATAGCACAAATTATCTATT
TTATTGTCTGTA