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Detailed information on CNT30301046


BLAST search results

BLAST vs Swiss-Prot:
sp|P09755|CB22_SOYBN, E-value = 5e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Triticum aestivumOryza sativa51.5152.3392.02426forward
CNT30187536Triticum aestivumSecale cereale75.771.9596.33626forward
CNT30393967Triticum aestivumTriticum turgidum68.929598.25570forward
CNT30554920Triticum aestivumOryza glaberrima51.6357.9492.04427forward
CNT30251938Triticum aestivumAvena sativa65.4268.3993.53541forward
CNT30665949Triticum aestivumTriticum dicoccoides91.2988.8298.01755forward
CNT30473044Triticum aestivumSaccharum spontaneum59.1355.5190.59489forward
CNT30129613Triticum aestivumCorymbia citriodora50.5457.190.19418forward
CNT30685781Triticum aestivumTriticum urartu63.2459.9896.56523forward
CNT30369202Triticum aestivumOryza glumipatula43.0539.9694.94356forward
CNT30108138Triticum aestivumOryza longistaminata5253.0994.42430forward
CNT30103236Triticum aestivumOryza rufipogon59.1349.5492.43489forward
CNT30574663Triticum aestivumOryza barthii58.5258.8192.15484forward
CNT30115779Triticum aestivumOryza nivara41.3565.1494.74342forward
CNT30603587Triticum aestivumOryza punctata41.2367.1395.01341forward

Expression of CNT30301046

Peptides detected in this lncRNA

>peptide 1 (59 aa)
NSQILHKHHLVVYTHQLLISNRPHMQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 3 (74 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSASSSGKTQPSAPSMAQRQWITSSSRFLAKVSGSADRPAVSQP*

Sequence

>CNT30301046
AAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGAATCGCCCTCACATGCAACATCTATCAGTCCGGACTAC
TCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGC
TCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTG
ACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGG
CGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGC
CGACAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCG
GAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCT
TCACAGGTGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCT
GACAGTAGGACTGTAGGAGGCGCTGGT