« Back to Triticum aestivum search


Detailed information on CNT30300990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 7e-36

BLAST vs NONCODE:
NONBNAT006984, E-value = 1e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441215Triticum aestivumAegilops tauschii102.8298.7496.89547forward
CNT30241715Triticum aestivumAvena sativa49.6266.8494.7264forward
CNT30147979Triticum aestivumBrachypodium distachyon49.2546.2988.93262forward

Expression of CNT30300990

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSPEMRFTPPLRASRRIAGLVMPWMLSRSTFRWRFAPPLPSPLPPLPRPDILRASPLSTVGLDWIVLVVG

>peptide 2 (43 aa)
RDKLLQFPFQTSSSTSLQQQHQLTRREQTPRRYHCSCTENHEP*

>peptide 3 (50 aa)
SGINCCNFHSKLLPVHLYNSNISSQDGSKHQGDTTALARRTTNPRQQLDR*

Sequence

>CNT30300990
TCAGGGATAAACTGCTGCAATTTCCATTCCAAACTTCTTCCAGTACATCTCTACAACAGCAACATCAGCTCACAAGACGGGAGCAAACACCAAGGAGATA
CCACTGCTCTTGCACGGAGAACCACGAACCCTAGACAGCAACTAGATAGATAGCACTACTACTCTCGGTCGGACGGCGGCGTCGCGAGCTGGATCGATGA
ACCCTCGGCCTAGCCTCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGAAGATCTTGAGC
ACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTGCGCGCCAGCCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGT
CGCGGAGCACCTTCCGGTGGCGCTTCGCGCCGCCCTTGCCCAGCCCCTTGCCTCCCTTGCCGCGGCCCGACATCCTCCGCGCTTCTCCCCTCTCTACGGT
GGGATTGGATTGGATTGTTTTGGTGGTGGGCG