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Detailed information on CNT30300930


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188086Triticum aestivumSecale cereale68.170.1293.12683forward
CNT30224540Triticum aestivumHordeum vulgare80.7674.5291.11810forward
CNT30440257Triticum aestivumAegilops tauschii62.7110096.03629forward
CNT30455809Triticum aestivumSaccharum spontaneum56.8352.3488.42570forward
CNT30141287Triticum aestivumLolium perenne64.6163.7287.5648forward
CNT30686878Triticum aestivumTriticum urartu80.4688.6886.86807forward

Expression of CNT30300930

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVTRASPKRDDDGKFLTALPAKAGEESDMVVAAILIDGGPRYSVLQE*

>peptide 2 (66 aa)
MVVQLEPHNGTLHYKRVYAHIHTLLARNKVGGECPCVVVDGVGEVVSEVLKWTLAGDDGLHKEAEH*

>peptide 3 (38 aa)
MPQGRRQGRAGQSCRPGRVGRRFHRAVHRQCGSPRRRP*

>peptide 4 (43 aa)
MACTKKPNIENMARRPFLISLTLSSANASGSSARPSGSKLPPG*

>peptide 5 (79 aa)
MDHLQLTVLGKGLRVGRQPSGVPAVVARELTIEVARGLARKWAEVEHAVRAIPRAAGDNLLGLCRRLAHGDAGVPEKRR*

>peptide 6 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30300930
ACAGAATTCTCGTAGTTTTCATTACACAATCAAATCCTCGTAATTTACACCATGGTAGTACAACTTGAACCGCACAACGGCACACTTCACTACAAGCGCG
TGTACGCGCATATACACACCTTACTTGCCAGGAACAAAGTTGGTGGCGAATGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGTTCT
CAAGTGGACCCTTGCCGGTGACGATGGCTTGCACAAAGAAGCCGAACATTGAGAACATGGCAAGGCGACCGTTCTTGATCTCCTTAACCTTGAGCTCGGC
GAATGCCTCAGGGTCGTCGGCAAGGCCGAGCGGGTCAAAGCTGCCGCCCGGGTAGAGTGGGTCGACGATTTCACCGAGCGGTCCACCGGCAATGCGGTAG
CCCTCGACGGCGCCCATGAGCACAACCTGACAAGCCCAGATGGCAAGGATACTTTGTGCGTGCACAAGGCTTGGGTTGCCGAGGTAGTCGAGGCCGCCCT
CGCTGAAGATCTGGGATCCGGCCTTGAACCAAACAGCCTCGCCGAACTTCACACCGTTGCGGGCGAGCAGCTCGGGGAAGACGCACCCGAGCGCGCCAAG
CATGGCCCAACGACAATGGATCACCTCCAGCTCACGGTTCTTGGCAAAGGTCTCAGGGTCGGCCGACAGCCCAGCGGTGTCCCAGCCGTAGTCGCCAGGG
AACTCACCATTGAGGTAGCTCGGGGGCTCGCCAGAAAGTGGGCCGAGGTAGAGCACGCGGTCAGAGCCATACCACGGGCTGCCGGAGACAACCTGCTTGG
CCTTTGCCGCCGTCTTGCGCATGGTGACGCGGGCGTCCCCGAAAAGAGACGATGATGGCAAGTTCTTGACTGCCTTGCCGGCAAAGGCTGGAGAAGAGAG
TGACATGGTGGTTGCGGCCATTCTGATCGATGGAGGTCCTCGGTATTCTGTTCTCCAAGAATGAGGAGTGGGTGTGGAGATGTCTTGAGAGGATCGGAGC
CCG