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Detailed information on CNT30300848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 3e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673071Triticum aestivumSetaria viridis57.3258.9281.39360forward
CNT30186769Triticum aestivumSecale cereale82.1767.8196.51516forward
CNT30224976Triticum aestivumHordeum vulgare86.3167.0894.1542forward
CNT30393514Triticum aestivumTriticum turgidum83.1273.6296.55522forward
CNT30664831Triticum aestivumTriticum dicoccoides87.187.196.71547forward
CNT30684606Triticum aestivumTriticum urartu98.4182.7396.6618forward
CNT30721860Triticum aestivumTriticum spelta76.2783.4595.82479forward
CNT30351769Triticum aestivumEragrostis tef53.6639.7982.49337forward

Expression of CNT30300848

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MCMCIYIATDCIHIRARFLEPCCYMNMDIHIFLGTSKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

>peptide 2 (50 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQ*

Sequence

>CNT30300848
CTCATTATTAATTACCCGAATACATAGTCGACAGATTGTATAATATATTATGTGCATGTGCATATACATAGCCACCGATTGCATTCACATACGAGCACGC
TTTCTCGAGCCATGTTGTTACATGAACATGGACATACACATATTCTTAGGAACAAGTAAGAAAGACAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAG
TTGACAAAACTGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCAATGAAG
CTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTG
TGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTAGCGGCCGTCGTAGTACCCGGGAGACGCATTGTGCTCACGGAAGATGAACCCGAC
CTTGCTGAACTCAAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGTCCACCTGCTTGAGGAGGGCCTCCGTGCTGAGCGGTGGCAGGTAAGACAGGGTC
TCGAACTTCTTGATGCCCTCGATGGGCC