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Detailed information on CNT30300827


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B5|PSBA_SACHY, E-value = 0.0

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Triticum aestivumEucalyptus grandis19.3568.9790220forward
CNT30145113Triticum aestivumMedicago truncatula27.7996.3490.82316forward
CNT3059907Triticum aestivumArabidopsis lyrata18.1240.4789.32206forward
CNT3067750Triticum aestivumLeersia perrieri22.789796.53259forward
CNT30655381Triticum aestivumRosa chinensis34.3973.0893.35391forward
CNT30627896Triticum aestivumDaucus carota45.2935.1191.46515forward
CNT30684658Triticum aestivumTriticum urartu51.2884.0199.83583forward
CNT30484609Triticum aestivumChara braunii10.8231.385.37123forward
CNT30577776Triticum aestivumOryza barthii15.0423.0597.08171reverse complement

Expression of CNT30300827

Peptides detected in this lncRNA

>peptide 1 (36 aa)
IPKAVNQIPTTGQAAKKKCKERELLKLAYWKINQPK*

>peptide 2 (42 aa)
MSSHNIISFFLLTKFVTLISRFIFSSFPDQTRGYQGTMHSTE*

>peptide 3 (34 aa)
MWNGCIRMLCSAWNTIIKLKVPEIPKGIPSEKLP*

Sequence

>CNT30300827
AATACCTAAAGCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAAT
CAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGA
TCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTT
GTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAAATCAAGAAA
ACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAG
CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCGGCTTCCCAAATTGGGTAAAAGTGCAA
TCCGATCGCCGCAGAAGTAGGGATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACT
GGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAG
TGCTAGTTATCCAGTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGT
AGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTATCCAGTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTC
TCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAATATAGATAATAGAAGGCTTGTTATT
TAACAGTATAACATAGACTATATACCAATGTCAACCA