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Detailed information on CNT30300808


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554477Triticum aestivumOryza glaberrima28.7353.5398.19387forward
CNT30208772Triticum aestivumHelianthus annuus34.5285.9597.2465reverse complement
CNT30644906Triticum aestivumCannabis sativa19.381.2587.31260forward

Expression of CNT30300808

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKKARTEMRKEGVRQDDFGSHVKVLRKVSAGARSRSRHVR

>peptide 2 (39 aa)
MADFRLCSTSRSHSQAGLYHYAYEQNQRLSLPSHTSVTL*

>peptide 3 (78 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSTRPSILYLFTCVGLGYGQFTGRIALPIRIFSWKFQPSLTMTTVATDY*

Sequence

>CNT30300808
GTTGACCCAGCCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAA
ACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTC
CGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATG
GCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTTACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACA
CCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGA
CGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTG
CACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTTCATGTCGGAGACAGCGGGGCAGTCGTTACACCAT
TCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACA
CTTCTCCTTCCGACCTTCCAACACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCC
CTCGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCGAC
GCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAATTTTTTCCTGGAAGTTT
CAACCGTCGTTGACTATGACAACAGTCGCGACCGACTATTAAGATCCTCGCGACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCTCCACTCTAAT
CAAAAGACTAAAGGCCCCTACGGAAGATGAAAAAGGCGAGGACTGAAATGAGAAAGGAAGGAGTTCGGCAAGACGACTTTGGTTCACACGTGAAAGTGCT
TCGAAAGGTGTCTGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCC