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Detailed information on CNT30300806


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 8e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Triticum aestivumOryza sativa44.4338.7892.56363forward
CNT30671434Triticum aestivumSetaria viridis37.3339.6192.46305forward
CNT30188325Triticum aestivumSecale cereale75.1572.0795.44614forward
CNT30224983Triticum aestivumHordeum vulgare31.8242.6298.08260forward
CNT30394515Triticum aestivumTriticum turgidum96.8296.2394.31791forward
CNT30589400Triticum aestivumMusa acuminata45.6554.5390.88373forward
CNT30250317Triticum aestivumAvena sativa64.7568.2690.36529forward
CNT30685532Triticum aestivumTriticum urartu61.253.398.4500forward
CNT30369213Triticum aestivumOryza glumipatula49.6950.7589.16406forward
CNT30579967Triticum aestivumEchinochloa crusgalli45.5336.5193.28372forward
CNT30117588Triticum aestivumOryza nivara44.4330.0792.56363forward
CNT30556832Triticum aestivumPanicum hallii41.7459.5193.55341forward

Expression of CNT30300806

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 2 (58 aa)
SQILHKHHLVVYTHQLLISNRPHMQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 4 (74 aa)
MHQAGVAEVVEVEHAVGAVPRAAGRRHLGLARRLAHGDAALPEGRRPGGLHRCARHRRGGERHGRGRHRALRTR*

Sequence

>CNT30300806
ATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGAATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCA
ATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCA
CTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACG
ATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGA
GGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATCAGCAC
CACCTGGCAGGCCCAGATGGCAAGGATGCTCTGCGCATGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGG
CTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCG
CCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTA
GGAGGCGCTGGTGGTCG