Detailed information on CNT30300733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006944, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020986Triticum aestivumCitrullus lanatus61.7213.8984.5129forward
CNT30220567Triticum aestivumHordeum vulgare94.7486.4697.98198forward
CNT30390355Triticum aestivumTriticum turgidum94.7428.5399.49198forward
CNT30241358Triticum aestivumAvena sativa46.4117.5189.6997forward
CNT3067537Triticum aestivumLeersia perrieri88.0462.3791.85184forward
CNT3055442Triticum aestivumAmborella trichopoda40.675.487.0685reverse complement
CNT30102868Triticum aestivumOryza rufipogon56.4652.6897.46118forward
CNT30116966Triticum aestivumOryza nivara49.282.8895.15103reverse complement

Expression of CNT30300733

Peptides detected in this lncRNA

>peptide 1 (59 aa)
YYSEFKRLTYLGISGSMLIFNSPKHFVACYALPHLWVPRYPPQAFPLLNLAINVKAMPS*

Sequence

>CNT30300733
ATACTACAGTGAGTTTAAAAGGTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCT
CATCTCTGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGAACCTCGCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGG
ATCTTATCA