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Detailed information on CNT30300556


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001181, E-value = 3e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Triticum aestivumOryza sativa40.9649.7596.14700forward
CNT30673559Triticum aestivumSetaria viridis3.7422.5492.1964reverse complement
CNT30730376Triticum aestivumCorchorus capsularis12.5253.6387.38214forward
CNT30492211Triticum aestivumOlea europaea8.2529.0784.4141reverse complement
CNT30188310Triticum aestivumSecale cereale21.0645.498.06360forward
CNT30220912Triticum aestivumHordeum vulgare27.589.6996.17470forward
CNT30542882Triticum aestivumBrassica napus39.4437.3489.02674forward
CNT30556052Triticum aestivumOryza glaberrima15.56106.8383.46266reverse complement
CNT30441515Triticum aestivumAegilops tauschii37.2198.9199.37636forward
CNT30361727Triticum aestivumSorghum bicolor16.7994.4195.12287forward
CNT30369712Triticum aestivumOryza glumipatula2.9821.0710051reverse complement
CNT30425595Triticum aestivumPapaver somniferum33.8298.889.45578forward
CNT30109402Triticum aestivumOryza longistaminata40.4952.5496.53692forward
CNT30148380Triticum aestivumBrachypodium distachyon24.1130.3897.33412forward
CNT30100129Triticum aestivumOryza rufipogon31.0150.4895.66530forward
CNT30116897Triticum aestivumOryza nivara16.7959.7994.08287forward
CNT30557406Triticum aestivumPanicum hallii22.5391.2395.32385forward

Expression of CNT30300556

Peptides detected in this lncRNA

>peptide 1 (70 aa)
KNTRSRRGLIMNPLILLFNSNLLLKPLFYLDMGVRRDYLLFISQAGIADPVSVYTVYRDISKRNLYLISF*

>peptide 2 (55 aa)
MARLDGITEPEQKKSRTGINKKILVKRVHVKNRFQITIDSLFKTCCSSSGSSCMP*

>peptide 3 (52 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGP*

>peptide 4 (52 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGP*

>peptide 5 (47 aa)
MAEWLIAPVLKTGIVLGTIEGSNPSLSFCLLNTFVSFIFFLSLIFLS*

Sequence

>CNT30300556
AAAAAAATACAAGAAGTAGGAGGGGTTTAATCATGAATCCATTGATTCTTCTCTTTAATTCAAATTTATTACTTAAACCGCTTTTTTATTTGGATATGGG
GGTGAGAAGAGATTATTTACTCTTTATTTCACAAGCGGGTATAGCGGATCCTGTATCCGTGTATACAGTATACAGAGATATATCGAAAAGGAACTTGTAT
CTGATATCTTTCTAGAGGCTAATAAATCTTTTTATTTTTTATATGGCTATGTTCTATTTGTAGGAGTAAAATAAGGATTAGGCTGTGGAGAGATGGCTGA
GTGGTTGATAGCTCCGGTCTTGAAAACCGGTATAGTTCTAGGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTTATTGAATACGTTTGTTTCT
TTCATTTTTTTTCTGTCCCTTATCTTTCTTTCATAAAAAGGAATGAATGGCTCGGCTAGATGGAATAACCGAGCCAGAACAGAAAAAAAGTAGAACAGGC
ATAAATAAGAAAATCTTAGTTAAGAGGGTTCATGTAAAGAACAGGTTCCAAATCACGATCGATTCCCTTTTCAAAACCTGCTGCAGCAGCTCGGGCTCTT
CCTGCATGCCATAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGAGAAGTTGATAACCAACTTCTAGGAGAGACATAATTAACTGCATTGATCT
CGGTAGCTACGCCACCCACGGAATTTAAAGAGCCTAAAGGAGCGTGGGTCATATATTCTGCTGAGCGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAA
CCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAGGTTCTAACCATGGAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAGATAACCTCCCCA
GTTGGGGAACGCATTAGATATTTACCTAAACCTGTGGGTCCTTGAGCGGATCCCACATTAGCTCCAAGACGCTGGTCTCTAACTAGAAAAGAAAAAAAGT
AGAACAGGTATAAATAAGAAAATCTTAGTTAAGAGGGTTCATGTAAAGAACAGGTTCCAAATCACGATCGATTCCCTTTTCAAAACCTGCTGCAGCAGCT
CGGGCTCTTCCTGCATGCCATAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGAGAAGTTGATAACCAACTTCTAGGAGAGACATAATTAACTG
CATTGATCTCGGTAGCTACGCCACCCACGGAATTTAAAGAGCCTAAAGGAGCGTGGGTCATATATTCTGCTGAGCGTCGTTCTTGCCAAGGTTGTATGTC
TTTTTTCAACCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAGGTTCGAACCATGGAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAGATA
ACCTCCCCAGTTGGGGAACGCATTAGATATTTACCTAAACCTGTGGGTCCTTGAGCGGATCCCACATTAGCTCCAAGACGCTGGTCTCTAACTAGAAAAG
TAAATGCTTGAGCTTGAGAAGCTTCTGGCCCGGTGGGTCCATAAAACTCACTCGGATAAGCTGTATTATTGAACCATACAAAACAACAAGCGATAAAACC
AAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAA
ATTCCGCCA