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Detailed information on CNT30300480


BLAST search results

BLAST vs Swiss-Prot:
sp|P12463|PSBA_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Triticum aestivumOryza sativa97.18100.7195.761273forward
CNT30378681Triticum aestivumArabidopsis thaliana50.8469.1692.19666forward
CNT3021612Triticum aestivumCitrullus lanatus7.3347.2997.9296forward
CNT30196112Triticum aestivumPisum sativum31.8390.0689.45417forward
CNT3095573Triticum aestivumSolanum tuberosum6.7922.0388.7689forward
CNT30391503Triticum aestivumTriticum turgidum26.8770.499.15352forward
CNT3089384Triticum aestivumVigna radiata42.9869.3391.47563forward
CNT30540531Triticum aestivumBrassica napus81.4555.0992.131067forward
CNT30555706Triticum aestivumOryza glaberrima52.2910096.2685forward
CNT30441777Triticum aestivumAegilops tauschii41.0795.5698.88538forward
CNT30598581Triticum aestivumFraxinus excelsior22.4483.2984.69294forward
CNT3018289Triticum aestivumZea mays92.8246.8695.391216forward
CNT30605440Triticum aestivumGossypium raimondii25.5781.9191.04335forward
CNT30627899Triticum aestivumDaucus carota43.2144.690.81566forward
CNT30683192Triticum aestivumTriticum urartu49.1663.5799.53644forward
CNT30360185Triticum aestivumLactuca sativa54.7310089.96717forward
CNT3058320Triticum aestivumAmborella trichopoda49.2492.8189.77645forward
CNT30147990Triticum aestivumBrachypodium distachyon70.3860.995.12922forward
CNT30102095Triticum aestivumOryza rufipogon10.5358.9795.65138forward
CNT30117690Triticum aestivumOryza nivara17.2570.498.67226forward
CNT3049694Triticum aestivumCucumis sativus8.1736.0389.72107forward

Expression of CNT30300480

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LGISVFSFFKNSYMLAEKPYPLIDGTSTSAKSRGKL*

>peptide 2 (34 aa)
MWNGCIRMLCSAWNTIIKLKVPEIPKGIPSEKLP*

>peptide 3 (30 aa)
IGYFCLFFLQKFLYVSRKTLSINRWNFNIS*

>peptide 4 (42 aa)
MSSHNIISFFLLTKFVTLISRFIFSSFPDQTRGYQGTMHSTE*

Sequence

>CNT30300480
ATTGGGTATTTCTGTCTTTTCTTTCTTCAAAAATTCTTATATGTTAGCAGAAAAACCTTATCCATTAATAGATGGAACTTCAACATCAGCTAAGTCTAGA
GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATGATATTAGCCCAAGTATTAATAACGCGACCTTGACTATCAA
CTAGAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAA
GAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA
CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGC
CGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAA
AGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA
CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGT
ATAACCACTCATCAACAGATGCGGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAGCACCAGAGATAATATTGTTTCC
ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAATTGCGGTCAATAAGG
TAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTATCCAGTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCT
CTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAATATAGATAATAGAAGGCTTGTTAT
TTAACAGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAA
TATAGATAAT