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Detailed information on CNT30300473


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 2e-155

BLAST vs NONCODE:
NONGMAT000778, E-value = 6e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Triticum aestivumSetaria viridis20.5631.0592.96199forward
CNT30532226Triticum aestivumEucalyptus grandis35.2347.1685.34341forward
CNT30316236Triticum aestivumCorylus avellana25.5253.8183.81247forward
CNT30547574Triticum aestivumIpomoea triloba20.0454.6586.08194forward
CNT30512729Triticum aestivumJuglans regia72.7368.4280.97704forward
CNT30372986Triticum aestivumArabidopsis thaliana49.1746.5882.14476forward
CNT30276060Triticum aestivumChenopodium quinoa31.5148.1182.95305forward
CNT3019597Triticum aestivumCitrullus lanatus31.8241.1882.14308forward
CNT30379936Triticum aestivumManihot esculenta26.0375.4586.9252forward
CNT30405823Triticum aestivumBeta vulgaris15.733.7886.84152forward
CNT30488117Triticum aestivumOlea europaea20.0439.7585.05194forward
CNT30711584Triticum aestivumGlycine max36.365085.8352forward
CNT3045373Triticum aestivumPrunus dulcis58.9972.8379.68571forward
CNT30191304Triticum aestivumSecale cereale75.2155.9696.29728forward
CNT30224354Triticum aestivumHordeum vulgare51.7696.5395.61501forward
CNT30395070Triticum aestivumTriticum turgidum49.963.1494.82483forward
CNT30561656Triticum aestivumActinidia chinensis59.7141.2983.22578forward
CNT3085191Triticum aestivumVigna radiata15.520.9284150forward
CNT30510505Triticum aestivumSolanum lycopersicum56.5150.3783.73547forward
CNT30552635Triticum aestivumOryza glaberrima38.9536.3289.39377forward
CNT30143941Triticum aestivumMedicago truncatula26.2456.779.53254forward
CNT30441158Triticum aestivumAegilops tauschii73.8694.299.72715forward
CNT30309793Triticum aestivumCamelina sativa41.8452.0684.2405forward
CNT3059659Triticum aestivumArabidopsis lyrata22.6250.4683.11219forward
CNT30612508Triticum aestivumArabis alpina51.3419.5880.68497forward
CNT30135610Triticum aestivumLolium perenne27.1731.0993.54263forward
CNT3014085Triticum aestivumZea mays32.5451.6489.52315forward
CNT30605685Triticum aestivumGossypium raimondii45.7657.9884.65443forward
CNT30683923Triticum aestivumTriticum urartu49.952.7995.65483forward
CNT30722731Triticum aestivumTriticum spelta21.941.4994.34212forward
CNT30345702Triticum aestivumEragrostis tef56.6167.8286.68548forward
CNT30361520Triticum aestivumSorghum bicolor32.6446.284.81316forward
CNT30596122Triticum aestivumOryza meridionalis36.0550.4390.54349forward
CNT30359537Triticum aestivumLactuca sativa32.9548.4179.94319forward
CNT30369654Triticum aestivumOryza glumipatula38.6442.589.04374forward
CNT30153558Triticum aestivumPrunus persica17.8751.1883.24173forward
CNT30107537Triticum aestivumOryza longistaminata36.1638.0888.29350forward
CNT30332479Triticum aestivumDioscorea rotundata14.5749.8285.82141forward
CNT30149525Triticum aestivumBrachypodium distachyon12.0938.7493.16117forward
CNT30100253Triticum aestivumOryza rufipogon38.9534.2189.39377forward
CNT30575986Triticum aestivumOryza barthii44.5236.4991.18431forward
CNT30497701Triticum aestivumDigitaria exilis33.4799.6990.74324forward
CNT30116094Triticum aestivumOryza nivara38.9542.8489.39377forward
CNT30604019Triticum aestivumOryza punctata31.8291.1291.56308forward
CNT3050899Triticum aestivumCucumis sativus15.3959.1381.21149forward

Expression of CNT30300473

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTSQWSNTHWGKAWPDVAALRVLENPKDSITGR*

>peptide 2 (79 aa)
MPRMFSSARAPSFDAHWNPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSHPNSSDRILERTLGSSRGPMR

Sequence

>CNT30300473
TAGCACAAAAGCAAACACAGCACAGTAAAAATAAACCACCATGGGATGCCAGAAATGTATGATCTAAGTTTAACATCTGTTACATCACCACAACCATCAT
CAAAACCATAGTCTCAGTAGCACCACATACAAACAACAACATAGTAAGGAAGACACATAGGGAGAAAAATACCGCGCCTCCCTTCACAGCAAGAGCCAGT
ACCAAAACATGGCCCCAAAATTTAGAGCTTGTCCTCGAAGCCCCAAAATTTAGAGCTTGTCCTCGAAGTCGGATAGGGGGGTCATCTGCTCCTTGAGACC
CTTCCTCTTGCGGATCTCCGTCACGAGCGTCGCCGACTGGGTGCCAGGGTCCAAAGGATCGGAGGCCATGACGTCCCAGTGGTCAAACACACACTGGGGG
AAGGCCTGGCCGGACGTCGCGGCCCTCAGGGTGCTCGAGAACCCGAAGGACTCGATAACAGGCAGGTAGGCCTTGATGTTGTAGAGTGGGGTACCTTGCC
TCTGCATCTCCTCGAACACGTGGCCTCTCTTCTGATTCAGCACACCATAGATACCACCAAGTGCGTTCTCCGGGGCCTGGATCTCAACCAGGTACACAGG
CTCCAGCAGCCTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTGGCTGTTGGGATGACCTGACCACCACCCCTGTGAATAGCATCAGTGTGC
AGAACAACATCACAGACCTCAAAGCAAATGCCACGCATGTTCTCCTCAGCCAGAGCACCTTCTTTCGATGCCCATTGGAACCCAGCCACAACAGAGTCCT
TGATTTCATTCAGATACTGCACTCCCTTACACATGTCAACAACCATGTTGGGGCCAGTCGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCGAGATCCTT
GTCCCACCCAAACTCCTCAGACAGGATCTTGGAGCGAACCTTAGGATCATCACGCGGGCCAATGCGGC