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Detailed information on CNT30300404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511569Triticum aestivumSolanum lycopersicum4.5928.0595.6569reverse complement

Expression of CNT30300404

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTFSNFVLLYYLVSWGLSLDYGEARGSCLYPSCCHK*

>peptide 2 (31 aa)
MPMIGVYVRRVCAYIGVCLPIMITKIPNCTY*

>peptide 3 (29 aa)
MMSRYLSSRSCHVFPRRSSGDSWACSSED*

>peptide 4 (29 aa)
MNHGVRGSNPSSCRSPSSSKICDDVNCFM*

>peptide 5 (36 aa)
MGCTSKIHCRYKNDFCGETKFPAILALGIVILQHLL*

>peptide 6 (41 aa)
MLLLLSVACCINSIWCSFCFACLPKCYLNVKRIILYNAYFI*

Sequence

>CNT30300404
GCTTCTGAAGTCTAAACCCAACAATATCCAAACCTTCTTACAGCATTAGTCACACTTGTGGCAGCAGAAGAGATCTTGATAAGATGCTGCTGCTGCTTAG
TGTTGCTTGCTGCATAAATTCGATCTGGTGCAGTTTCTGCTTTGCATGCTTGCCTAAGTGTTACCTTAATGTCAAGAGAATAATCTTGTACAATGCATAT
TTTATCTGATTTTTGCGTATCCAACCCATGTGCTTTATATTAACCGAACTGATTTAAGTGTCATACTCTTGTTTTGTATGTCAGTGGCATGTGCATGTAA
AATCTTTTGCAGATAGTACAAGAACAACCAAGCCTTCTTACAGAGTGTTAGATTGCTTGATGCTGCTACTTCGTATGCTTGCTTAAGTGTCACCCCAATG
TCAAGAGAATAATCTTGTACGATGAATATTTTACCTTTTTTTTGTTCTTGTACTGTTTTTTTTTGCTGATCCACTACACTTGCTTTACATTAACCAAAAT
GATTTGAGCAAGCATACTATTGTTTTATTGCCATGGGGTGTACAAGTAAAATCCATTGCAGATACAAGAATGACTTTTGTGGAGAAACAAAATTCCCAGC
CATATTAGCTTTGGGAATAGTCATCCTGCAACACCTTCTTTAATTCCTCTCGTGGCCATGAATCCGTTGGTTATAAAGTTTGCAATAACAAAACAACATC
GTGTTTCTTGTATACTGGAACATTTTTTTTCCATTTAAGGTAGCTGTTTATTCAATGACATTTTCTAACTTTGTCCTACTCTATTATTTGGTTTCTTGGG
GCTTATCTCTAGATTATGGTGAAGCAAGGGGGAGTTGCTTATATCCGAGTTGTTGCCACAAGTGACTTTCATCCTCTATTGTAGCTTTAGCGAATATAGT
TGATGCATGATTGCAGATGCCAATGATAGGTGTATATGTGAGAAGAGTATGTGCGTACATTGGTGTATGTCTACCAATAATGATTACTAAAATTCCAAAT
TGCACATATTGACAGTGGAACCTCCCAGTTTCCATTTCTCTTGAAGGCTACATTTGCATGTAATTTTTTTGACAACCAAATTGCTACATAGACTACTTTG
TTTTAGTAGTGCAGTATTTTATGTTCTTCCATCAGAGGTATTTCATTCATTTTTTTACACCTTTGGATATGTGACTTCATCTTTCTTTTATATATAAAAT
AGACGCCAGATGTGTGCATAACTACTTCCATGATGAGCCGATATTTGTCGAGCAGGTCATGCCACGTCTTCCCACGGAGATCCAGTGGGGACAGCTGGGC
CTGTAGCTCAGAGGATTAGAGCACGTGGCTATGAACCACGGTGTTAGGGGTTCGAATCCCTCCTCTTGTCGGTCACCATCGAGCTCCAAAATATGTGATG
ATGTAAATTGTTTTATGTGAGATGTTTAATGTGTACTGGTGATGCAGCATTTTGGACTGCTCTGAAATATAAACGGATAGCTAATTTTAGGTTGCTTCAA
AA