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Detailed information on CNT30300309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221733Triticum aestivumHordeum vulgare52.2396.297.37304reverse complement

Expression of CNT30300309

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MEMPAKEKIYLIVSRPISIFRKKKQEFSSFFINIKKKEYN*

>peptide 2 (34 aa)
MGGRTKIEDSEKKKDLRNPILCVAQRSCDFFLFL*

>peptide 3 (36 aa)
MLLSNFMVDLIRTLFAFLINNRQKKRFFLYNLLVLL*

Sequence

>CNT30300309
ATGGGTGGAAGAACTAAAATAGAGGATTCTGAAAAAAAAAAGGACCTTCGAAATCCAATTTTATGTGTAGCGCAAAGGAGTTGCGATTTCTTCTTATTCC
TATAGAACATCTAGTAACAAGAATATGAAATCGTAAATAGCGAAAAATTCTTGTCTTGCGCGGTCTAAGTCTAAGGAAATAAAAAAAATTCGCTTATACA
ATTTCATCTACATCGAATTTATATATCAGAATAGCGGATAGAGGCATCATTAAAGGAGTCAGGTCTACTTACTTTATGCTTCTTTCCAATTTTATGGTGG
ATTTGATAAGAACCCTTTTTGCTTTCTTGATAAATAATCGACAAAAAAAGCGTTTTTTTTTATATAACCTGCTTGTTTTATTATAATTATAACAAGTCCT
ATATGGAAATGCCCGCTAAAGAGAAAATCTATTTGATTGTCTCTCGGCCAATATCGATTTTTAGAAAGAAAAAACAAGAATTTTCTTCTTTTTTTATTAA
CATTAAGAAAAAAGAATATAATTAAAATGGAATTGGCAATATAATTTTTATAGACTTTTGAAAGAAAAAAAGGGGGTTTTTT