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Detailed information on CNT30300179


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672484Triticum aestivumSetaria viridis18.6856.3387.16218forward
CNT30272384Triticum aestivumChenopodium quinoa49.2753.7981.22575forward
CNT30404760Triticum aestivumBeta vulgaris33.5945.1180.1392forward
CNT30709232Triticum aestivumGlycine max28.1143.9785.06328forward
CNT30393350Triticum aestivumTriticum turgidum52.1960.8498.52609forward
CNT30311914Triticum aestivumCamelina sativa27.4251.7880.62320forward
CNT3062430Triticum aestivumArabidopsis lyrata29.9930.3681.43350forward
CNT3017684Triticum aestivumZea mays28.7181.3186.87335forward
CNT30717839Triticum aestivumMalus domestica golden10.9725.286.72128forward
CNT30685178Triticum aestivumTriticum urartu66.595.5798.2776forward
CNT3053264Triticum aestivumAmborella trichopoda17.9133.3984.69209forward
CNT30328300Triticum aestivumAsparagus officinalis1246.9880.71140forward
CNT3037990Triticum aestivumCucumis melo14.0555.0381.71164forward
CNT30581271Triticum aestivumEchinochloa crusgalli16.235.6684.13189forward
CNT30116632Triticum aestivumOryza nivara22.4568.4182.44262forward

Expression of CNT30300179

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MKLAIGLLGLLRPTRARRTDRLIAFTASSWPMTRLCNVSSILRSLSDSSVETFSTGIPVHDDTMCWISDSCTIGPVSPDSGCYLGLQFHFTISQLS

>peptide 2 (76 aa)
MLNNLLRILYSTNNYTATAGVGSSRSPLSPFSTMTFPSGSTSTMTESPSLTSPPKIFSARLSSRSLMMALLSGRAP*

>peptide 3 (36 aa)
MLNTSGCAFSISSKSTTLYGRRRTASVSCPPSVYPT*

>peptide 4 (33 aa)
MAAVEPPPSVAHLQCIPHSLVVNRSTWTQCASP*

>peptide 5 (34 aa)
MRLLNLIKKHNAVWPPSNRLRQLPTFSVSHIAWW*

>peptide 6 (42 aa)
GNENAVLYICLTIFYVFYTVPTTIQRPPGLEAPAVRSRHSAQ*

>peptide 7 (36 aa)
MMTQCAGYLIHAPLAPSLPTQAVIWAFNSISRSRNSP

>peptide 8 (43 aa)
MSAISLTSSLVSCLKTIISSRRLRNSGRKYCFISSITKLLILP*

Sequence

>CNT30300179
AAGGAAATGAAAACGCTGTATTGTATATATGCTTAACAATCTTCTACGTATTCTATACAGTACCAACAACTATACAGCGACCGCCGGGGTTGGAAGCTCC
CGCAGTCCGCTCTCGCCATTCAGCACAATGACTTTCCCCTCCGGGTCCACATCAACGATGACAGAGTCGCCCTCTTTGACCTCCCCGCCCAAAATCTTCT
CCGCGAGGCTGTCCTCCAGGAGCCTCATGATGGCCCTCCTCAGCGGCCGCGCTCCGTAGCTAGGGTTATACCCTTCGTCCACGACCCGCTCCTTGAACTT
CTCCGTCACCTGCAGCATTATGTCCGCGATCTCTTTGACTTCCAGCTTGGTCAGCTGTCTGAAGACGATCATCTCGTCCAGACGGTTGAGAAACTCCGGT
CGGAAGTACTGCTTCATCTCCTCGATCACCAAGCTCTTGATCCTGCCATAGCTGCTGTCCTTCTCGTCGGAGTCAAGATCGAACCCGATCTTCCTCCCTC
CCTTCTCAATCACGCTGCTCCCAACATTTGATGTCATTATCAGGAGCGTGTTCTTGAAGTCCACCGTTCTCCCCTTGCTGTCGGTTAACCTTCCGTCTTC
CAGGATCTGGAGCATCATGTTGAACACATCCGGATGCGCCTTCTCAATCTCATCAAAAAGCACAACGCTGTATGGCCGCCGTCGAACCGCCTCCGTCAGT
TGCCCACCTTCAGTGTATCCCACATAGCCTGGTGGTGAACCGATCAACTTGGACACAGTGTGCCTCTCCATGAACTCACTCATATCCAGCCGGATCATGG
CTTCTTCAGAGCCGAAGTAATATGATGCCAGCGTCTTTGCAAGCTCTGATTTCCCAACACCAGTGGGACCTGCAAAAATGAAGCTCGCAATTGGTCTGTT
GGGGCTCTTGAGGCCCACACGAGCACGGCGAACGGACCGGCTTATTGCTTTCACAGCCTCATCTTGGCCGATGACACGCTTATGCAATGTCTCTTCCATC
TTAAGAAGTTTATCAGATTCGTCTGTCGAGACTTTCTCCACTGGAATACCAGTCCATGATGACACAATGTGCTGGATATCTGATTCATGCACCATTGGCC
CCGTCTCTCCCGACTCAGGCTGTTATCTGGGCCTTCAATTCCATTTCACGATCTCGCAACTCTCCAG