« Back to Triticum aestivum search


Detailed information on CNT30300099


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 6e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Triticum aestivumSetaria italica19.621.3287.74155forward
CNT30393324Triticum aestivumTriticum turgidum66.7550.1494.7528forward
CNT30665882Triticum aestivumTriticum dicoccoides10085.7999.75791forward
CNT30597191Triticum aestivumOryza meridionalis17.0746.5594.07135forward
CNT30151009Triticum aestivumBrachypodium distachyon43.1166.688.86341forward

Expression of CNT30300099

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSRKTETMLFTCMHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 2 (58 aa)
CREHGHTHILILGTNKKDKWKRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

>peptide 3 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

Sequence

>CNT30300099
TGTCGGGAACATGGACATACACATATTCTTATCTTAGGAACAAACAAGAAAGATAAATGGAAAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACCG
CAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGC
ACCTGGCGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGCGTGGCGTCGGTGC
ACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCAGGGGATGCGTTGTGCTCACGGAAGATAAACCCAACCTTGCTGAACTC
GAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGGACAGGGTCTCGAACTTCTTAATGCCCTCGATGGGCCACACCTGCAAATAAGATTGACATTTTTGA
TACATTAACAGGCTAGAATTCTAGTTCTACACAATTGATGTTATTGACTTCCGTCCGTCAGCTAGAAAATGAGTAGAAAGACAGAGACGATGTTGTTTAC
CTGCATGCACCTGATCCTTCCACCGTTGCTGACGCTGCCGAGGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGG
AAAGGAGCGACGGAGGTGGCCGACGAGGCCATCACGGTGGGGGCCATGGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCT