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Detailed information on CNT30300058


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673334Triticum aestivumSetaria viridis20.7122.0787.564forward
CNT30521178Triticum aestivumSetaria italica20.7113.0987.564forward
CNT30249492Triticum aestivumAvena sativa20.3918.4892.0663forward
CNT30282Triticum aestivumZea mays20.7121.0585.9464forward
CNT30689645Triticum aestivumTriticum urartu95.4769.4190.17295forward
CNT30367469Triticum aestivumSorghum bicolor20.719.1885.9464forward

Expression of CNT30300058

Peptides detected in this lncRNA

>peptide 1 (44 aa)
FFFFFGDDEQFATQFTIHTDNRLKNHQIKGMSTWRRAAPRNKLA*

>peptide 2 (31 aa)
MGELLYGLLRLGELGADLLGGLDHVGEGGLDL

>peptide 3 (30 aa)
FFFFLEMMNNSPLSLQYTPTTASKTTKSKG*

>peptide 4 (69 aa)
MAPRRAEKQTSLTNRWIQRPRLFKVNTAMVATSSLQLKWGSCYTAYCALASSARICLAASTMLVRAGLTS

Sequence

>CNT30300058
TTTTTTTTTTTTTTTGGAGATGATGAACAATTCGCCACTCAGTTTACAATACACACCGACAACCGCCTCAAAAACCACCAAATCAAAGGGATGAGCACAT
GGCGCCGCGCCGCGCCGAGAAACAAACTAGCCTAACCAACAGGTGGATACAGAGACCCAGATTATTCAAAGTAAACACGGCTATGGTGGCGACATCCTCC
TTGCAATTAAAATGGGGGAGCTGCTATACGGCTTACTGCGCCTTGGCGAGCTCGGCGCGGATCTGCTTGGCGGCCTCGACCATGTTGGTGAGGGCGGGCT
TGACCTCGG