Detailed information on CNT30299935


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002454, E-value = 3e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Triticum aestivumSetaria italica78.0351.9498.831712forward
CNT30439575Triticum aestivumAegilops tauschii63.9599.599.711403reverse complement
CNT30242786Triticum aestivumAvena sativa39.65100.4698.51870forward
CNT3099908Triticum aestivumOryza rufipogon12.63101.0997.47277forward

Expression of CNT30299935

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MSAKAVALPYTRIRFLAGADTDFSLKAKKKKWANTRPSGRTCRLRLRAPADTFRSTFTCKPKSSCRTPSFLISVLAF

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 3 (42 aa)
GRFQRRKAMGRDFSVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 4 (34 aa)
MGRDFSVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 5 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 6 (29 aa)
TLSEAKGHGERFFCDPWISDRETVSKLRG*

>peptide 7 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

Sequence

>CNT30299935
GGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGATTTTTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCT
CTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGAAAGGC
CATGGGGAGAGATTTTTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCG
AACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCG
AAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGTTGCCGTAGCGCGCCCTACGGAGTTGTA
CAAAGTCAGCAACCGTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATC
CGGCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCATGTTCGAATGATGATCGCTTTTACGCGAGAAA
GGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGA
GAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGTGTACCTTTCGCATGATGGGTCAGCGAGGAAATGG
GAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGG
TTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGA
TATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTA
CCAACCCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGT
ACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGT
AATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCGAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAG
TAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAA
ACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGT
ACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCGCTC
TCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCAGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGC
GAAGCTCTCGTCTTTGGCGACCAGCAAACGGAGGGCTAAAACCTGTAGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTGCGCTTCCGTACACGCGCAT
ACGTTTTCTTGCTGGGGCGGACACGGATTTCTCTCTAAAGGCGAAGAAAAAGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCTC
CGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTAAACCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTT