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Detailed information on CNT30299735


BLAST search results

BLAST vs Swiss-Prot:
sp|P46420|GSTF4_MAIZE, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30133092Triticum aestivumLolium perenne27.559.6883.62116forward
CNT30361429Triticum aestivumSorghum bicolor21.8516.8585.8792forward

Expression of CNT30299735

Peptides detected in this lncRNA

>peptide 1 (58 aa)
HNHSLLTLFLVGWIEMIRTSQHTKHMPYHGILPLPNPKSGEMGEVGEADEIPDQVLVA*

>peptide 2 (49 aa)
MMQFHTMGLSTGSSWWASTSTHTSTIADSSRLPAPRSPGLCLRRICLAMA

>peptide 3 (52 aa)
MVFSRFRTQNPEKWVRSAKLMKSPTKYLLLDSLASYTSSSFFSFSTLSSTRP*

Sequence

>CNT30299735
CACAACCACTCTTTGCTTACTTTATTTCTCGTGGGTTGGATAGAGATGATTAGAACATCGCAACACACAAAGCATATGCCTTATCATGGTATTCTCCCGC
TTCCGAACCCAAAATCCGGAGAAATGGGTGAGGTCGGCGAAGCTGATGAAATCCCCGACCAAGTACTTGTTGCTTGACAGCCTCGCCTCGTACACCTCCA
GCAGCTTCTTCAGTTTCTCGACGCTCTCATCGACGAGGCCCTGATCGACGTCCCTCCCAACAAACGGGTTGATGATGCAGTTCCATACGATGGGCTTGAG
TACGGGCTCCAGCTGGTGGGCATCCACGTCGACCCATACGTCCACCATCGCTGACTCCTCGAGGCTGCCCGCTCCTAGAAGCCCGGGCTTGTGTTTGCGG
AGAATATGCCTTGCAATGGCG