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Detailed information on CNT30299594


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 7e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Triticum aestivumSesamum indicum30.0319.9591.63227forward
CNT30197509Triticum aestivumPisum sativum59.2619.6896.21448forward
CNT30182368Triticum aestivumSecale cereale89.2933.28100675forward
CNT30220864Triticum aestivumHordeum vulgare59.3933.3399.78449forward
CNT30394428Triticum aestivumTriticum turgidum89.2993.3699.7675forward
CNT30586133Triticum aestivumMusa acuminata52.9118.0992.75400forward
CNT30437984Triticum aestivumAegilops tauschii47.8895.7799.45362forward
CNT30467405Triticum aestivumSaccharum spontaneum89.2941.6499.56675forward
CNT30210175Triticum aestivumHelianthus annuus48.4197.3492.9366forward
CNT30627916Triticum aestivumDaucus carota59.2612.4296.65448forward
CNT30427311Triticum aestivumPapaver somniferum79.2316.2793.32599forward
CNT30574574Triticum aestivumVitis vinifera59.2613.3196.43448forward
CNT3056795Triticum aestivumAmborella trichopoda55.1678.3892.57417forward
CNT30104639Triticum aestivumOryza rufipogon59.3940.8999.33449forward
CNT30577102Triticum aestivumOryza barthii26.7288.9999.01202forward
CNT30115468Triticum aestivumOryza nivara89.2919.5599.26675forward

Expression of CNT30299594

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 2 (35 aa)
YPFPGKEIIRLVKKTRIKNQKERRERTGSWRLHNR*

>peptide 3 (44 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEP

>peptide 4 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

>peptide 5 (33 aa)
LPLPRKGDYTFSKKNENKKSKRKKRKNWELAPT*

>peptide 6 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

Sequence

>CNT30299594
GTTACCCCTTCCCCGGAAAGGAGATTATACGTTTAGTAAAAAAAACGAGAATAAAAAATCAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACA
TAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTCTTGACTTGACTTATTAATAAGAAAACTACTCACTAACAAAA
TGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATG
ATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCT
AAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTAT
AGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTTACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAG
AATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGAT
AGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCG