« Back to Triticum aestivum search


Detailed information on CNT30299182


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Triticum aestivumSecale cereale74.2278.9895.31789forward
CNT30552325Triticum aestivumOryza glaberrima33.8738.5994.44360forward
CNT30440100Triticum aestivumAegilops tauschii93.1397.0697.27990forward
CNT30250793Triticum aestivumAvena sativa64.7267.4592.88688forward
CNT30665254Triticum aestivumTriticum dicoccoides88.6294.4899.26942forward
CNT30685359Triticum aestivumTriticum urartu71.2175.496.3757forward
CNT30362364Triticum aestivumSorghum bicolor53.3455.792.95567forward
CNT30596886Triticum aestivumOryza meridionalis55.4157.8693.72589forward
CNT30603531Triticum aestivumOryza punctata59.0857.6193.79628forward

Expression of CNT30299182

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAPAIACYSLALLRVS*

>peptide 3 (43 aa)
MACTKKPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 4 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 5 (30 aa)
DFQKNIRRTSVFDIQKFRETKKLSRRTEMP*

Sequence

>CNT30299182
TGGACTTCCAGAAAAATATTCGGAGAACTTCTGTATTTGACATTCAGAAGTTCAGAGAAACCAAGAAGTTAAGCAGAAGAACAGAGATGCCTTGATTAAT
CTGAGAAAATAGCCAGATATTACACAAACACCATCTTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGAC
TACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCG
CGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGCCCCTTGCCG
GTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCT
CGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGCCGCCCTCGCTGAAGATCTG
GGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGG
CAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGA
GGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGT
CTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGCCC
GCCATTGCGTGCTACTCGCTAGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTG