« Back to Triticum aestivum search


Detailed information on CNT30298862


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186674Triticum aestivumSecale cereale71.8777.4196.27723forward
CNT30394891Triticum aestivumTriticum turgidum91.65101.7798.26922forward
CNT30552254Triticum aestivumOryza glaberrima52.0952.5691.6524forward
CNT30251387Triticum aestivumAvena sativa58.0556.2194.52584forward
CNT30666046Triticum aestivumTriticum dicoccoides85.9894.1299.31865forward
CNT30472898Triticum aestivumSaccharum spontaneum52.0953.6391.41524forward
CNT30345513Triticum aestivumEragrostis tef51.9956.3693.31523forward
CNT30596879Triticum aestivumOryza meridionalis52.3948.5391.08527forward
CNT30369293Triticum aestivumOryza glumipatula55.3758.9490.48557forward
CNT3099595Triticum aestivumOryza rufipogon48.0155.8492.13483forward
CNT30574623Triticum aestivumOryza barthii52.0952.0991.41524forward
CNT30497363Triticum aestivumDigitaria exilis51.7944.2790.4521forward
CNT30603457Triticum aestivumOryza punctata48.6150.9993.66489forward

Expression of CNT30298862

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAPAIACYSLALLRVS*

>peptide 2 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (30 aa)
DFQKNIRRTSVFDIQKFRETKKLSRRTEMP*

>peptide 4 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30298862
TGGACTTCCAGAAAAATATTCGGAGAACTTCTGTATTTGACATTCAGAAGTTCAGAGAAACCAAGAAGTTAAGCAGAAGAACAGAGATGCCTTGATTAAT
CTGAGAAAATAGCCAGATATTACACAAACACCATCTTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGAC
TACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCG
CGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGC
GACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCG
AGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGA
GCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTA
GTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCC
GCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCCGCCATCGCCGGGG
AGGAGAGCGCCATGGTCGCGCCCGCCATTGCGTGCTACTCGCTAGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGC
TGTGGA