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Detailed information on CNT30298786


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43206|CATA1_WHEAT, E-value = 4e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Triticum aestivumOryza sativa88.9319.7195.28233forward
CNT30519701Triticum aestivumSetaria italica88.9317.1487.55233forward
CNT3020926Triticum aestivumCitrullus lanatus46.5617.583.61122forward
CNT30708847Triticum aestivumGlycine max41.9811.4582.73110forward
CNT30223857Triticum aestivumHordeum vulgare45.4247.2294.96119forward
CNT30563752Triticum aestivumActinidia chinensis46.5625.0586.89122forward
CNT30542306Triticum aestivumBrassica napus32.0618.2683.3384forward
CNT302263Triticum aestivumZea mays95.4222.3894250forward
CNT30369978Triticum aestivumOryza glumipatula88.9331.0395.28233forward
CNT3022569Triticum aestivumPopulus trichocarpa21.376.4687.556forward

Expression of CNT30298786

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SDSGWWEKKSRMRQFSWMWVLGLGLSACTMSGNFMPSRMKKTGKLLPTRSQLPSRV*

>peptide 2 (85 aa)
RLRVVGEEVEDAPVLLDVGLGVGLERVHHVRELHAVADEEDGEVVADQVPVALPGVELDGEAARVAERLGGAALVDHGGSPPAGLG

Sequence

>CNT30298786
AGCGACTCCGGGTGGTGGGAGAAGAAGTCGAGGATGCGCCAGTTCTCCTGGATGTGGGTCTTGGGGTTGGGCTTGAGCGCGTGCACCATGTCCGGGAACT
TCATGCCGTCGCGGATGAAGAAGACGGGGAAGTTGTTGCCGACCAGGTCCCAGTTGCCCTCCCGGGTGTAGAACTTGATGGCGAAGCCGCGCGGGTCGCG
GAGCGTCTCGGGGGAGCCGCGCTCGTGGATCACGGTGGTAGTCCTCCAGCAGGATTGGGCCT